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Zhao, G., Hoffmann, H., van Bussel, L. G. J., Enders, A., Specka, X., Sosa, C., et al. (2015). Effect of weather data aggregation on regional crop simulation for different crops, production conditions, and response variables. Clim. Res., 65, 141–157.
Abstract: We assessed the weather data aggregation effect (DAE) on the simulation of cropping systems for different crops, response variables, and production conditions. Using 13 process-based crop models and the ensemble mean, we simulated 30 yr continuous cropping systems for 2 crops (winter wheat and silage maize) under 3 production conditions for the state of North Rhine-Westphalia, Germany. The DAE was evaluated for 5 weather data resolutions (i.e. 1, 10, 25, 50, and 100 km) for 3 response variables including yield, growing season evapotranspiration, and water use efficiency. Five metrics, viz. the spatial bias (Delta), average absolute deviation (AAD), relative AAD, root mean squared error (RMSE), and relative RMSE, were used to evaluate the DAE on both the input weather data and simulated results. For weather data, we found that data aggregation narrowed the spatial variability but widened the., especially across mountainous areas. The DAE on loss of spatial heterogeneity and hotspots was stronger than on the average changes over the region. The DAE increased when coarsening the spatial resolution of the input weather data. The DAE varied considerably across different models, but changed only slightly for different production conditions and crops. We conclude that if spatially detailed information is essential for local management decision, higher resolution is desirable to adequately capture the spatial variability for heterogeneous regions. The required resolution depends on the choice of the model as well as the environmental condition of the study area.
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Mansouri, M., & Destain, M. - F. (2015). Predicting biomass and grain protein content using Bayesian methods. Stoch. Environ. Res. Risk Assess., 29(4), 1167–1177.
Abstract: This paper deals with the problem of predicting biomass and grain protein content using improved particle filtering (IPF) based on minimizing the Kullback-Leibler divergence. The performances of IPF are compared with those of the conventional particle filtering (PF) in two comparative studies. In the first one, we apply IPF and PF at a simple dynamic crop model with the aim to predict a single state variable, namely the winter wheat biomass, and to estimate several model parameters. In the second study, the proposed IPF and the PF are applied to a complex crop model (AZODYN) to predict a winter-wheat quality criterion, namely the grain protein content. The results of both comparative studies reveal that the IPF method provides a better estimation accuracy than the PF method. The benefit of the IPF method lies in its ability to provide accuracy related advantages over the PF method since, unlike the PF which depends on the choice of the sampling distribution used to estimate the posterior distribution, the IPF yields an optimum choice of this sampling distribution, which also utilizes the observed data. The performance of the proposed method is evaluated in terms of estimation accuracy, root mean square error, mean absolute error and execution times.
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Boeckx, T., Winters, A. L., Webb, K. J., & Kingston-Smith, A. H. (2015). Polyphenol oxidase in leaves: is there any significance to the chloroplastic localization. J. Experim. Bot., 66(12), 3571–3579.
Abstract: Polyphenol oxidase (PPO) catalyses the oxidation of monophenols and/or o-diphenols to o-quinones with the concomitant reduction of oxygen to water which results in protein complexing and the formation of brown melanin pigments. The most frequently suggested role for PPO in plants has been in defence against herbivores and pathogens, based on the physical separation of the chloroplast-localized enzyme from the vacuole-localized substrates. The o-quinone-protein complexes, formed as a consequence of cell damage, may reduce the nutritional value of the tissue and thereby reduce predation but can also participate in the formation of structural barriers against invading pathogens. However, since a sufficient level of compartmentation-based regulation could be accomplished if PPO was targeted to the cytosol, the benefit derived by some plant species in having PPO present in the chloroplast lumen remains an intriguing question. So is there more to the chloroplastic location of PPO? An interaction between PPO activity and photosynthesis has been proposed on more than one occasion but, to date, evidence either for or against direct involvement has been equivocal, and the lack of identified chloroplastic substrates remains an issue. Similarly, PPO has been suggested to have both pro- and anti-oxidant functions. Nevertheless, several independent lines of evidence suggest that PPO responds to environmental conditions and could be involved in the response of plants to abiotic stress. This review highlights our current understanding of the in vivo functions of PPO and considers the potential opportunities it presents for exploitation to increase stress tolerance in food crops.
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Seddaiu, G., Iocola, I., Farina, R., Orsini, R., Iezzi, G., & Roggero, P. P. (2016). Long term effects of tillage practices and N fertilization in rainfed Mediterranean cropping systems: durum wheat, sunflower and maize grain yield. European Journal of Agronomy, 77, 166–178.
Abstract: Long term investigations on the combined effects of tillage systems and other agronomic practices such as mineral N fertilization under Mediterranean conditions on durum wheat are very scanty and findings are often contradictory. Moreover, no studies are available on the long term effect of the adoption of conservation tillage on grain yield of maize and sunflower grown in rotation with durum wheat under rainfed Mediterranean conditions. This paper reports the results of a 20-years experiment on a durum wheat-sunflower (7 years) and durum wheat–maize (13 years) two-year rotation, whose main objective was to quantify the long term effects of different tillage practices (CT = conventional tillage; MT = minimum tillage; NT = no tillage) combined with different nitrogen fertilizer rates (N0, N1, N2 corresponding to 0, 45 and 90 kg N ha−1 for sunflower, and 0, 90 and 180 kg N ha−1 for wheat and maize) on grain yield, yield components and yield stability for the three crops. In addition, the influence of meteorological factors on the interannual variability of studied variables was also assessed. For durum wheat, NT did not allow substantial yield benefits leading to comparable yields with respect to CT in ten out of twenty years. For both sunflower and maize, NT under rainfed conditions was not a viable options, because of the unsuitable (i.e., too wet) soil conditions of the clayish soil at sowing. Both spring crops performed well with MT. No significant N × tillage interaction was found for the three crops. As expected, the response of durum wheat and maize grain yield to N was remarkable, while sunflower grain yield was not significantly influenced by N rate. Wheat yield was constrained by high temperatures in January during tillering and drought in April during heading. The interannual yield variability of sunflower was mainly associated to soil water deficit at flowering and air temperature during seed filling. Heavy rains during this latter phase strongly constrained sunflower grain yield. Maize grain yield was negatively affected by high temperatures in June and drought in July, this latter factor was particularly important in the fertilized maize. Considering both yield and yield stability, durum wheat and sunflower performed better under MT and N1 while maize performed better under both CT and MT and with N2 rates. The results of this long term study are suitable for supporting policies on sustainable Mediterranean rainfed cropping systems and also for cropping system modelling.
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Abdelrahman, H. M., Olk, D. C., Dinnes, D., Ventrella, D., Miano, T., & Cocozza, C. (2016). Occurrence and abundance of carbohydrates and amino compounds in sequentially extracted labile soil organic matter fractions. Journal of Soils and Sediments, 16(10), 2375–2384.
Abstract: Purpose The study aimed to describe the carbohydrates and amino compounds content in soil, the light fraction (LF), the >53 μm particulate organic matter (POM), and the mobile humic acid (MHA) fraction and to find out whether the carbohydrates and amino compounds can be used to explain the origin of SOM fractions. Materials and methods Soil samples were collected from two agricultural fields managed under organic farming in southern Italy. The LF, the POM, and the MHA were sequentially extracted from each soil sample then characterized. Seven neutral sugars and 19 amino compounds (amino acids and amino sugars) were determined in each soil sample and its correspondent fractions. Results and discussion The MHA contained less carbohydrate than the LF or the POM but its carbohydrates, although dominated by arabinose, were relatively with larger microbial contribution as revealed by the mannose/xylose ratio. The amino compounds were generally less in the LF or the POM than in the MHA, while the fungal (aspartic and serine) and bacterial (alanine and glycine) amino acids were larger in the MHA than in the LF or the POM, underlining the microbial contribution to the MHA. Results from both sites indicated that total carbohydrates content decreased moving from the LF (younger fraction) to the MHA (older fraction), which seems to follow a decomposition continuum of organic matter in the soil-plant system. Conclusions The study showed that the MHA is a labile humified fraction of soil C due to its content of carbohydrates and concluded that the content of carbohydrates and amino compounds in the LF, the POM and the MHA can depict the nature of these fractions and their cycling pattern and response to land management.
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