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Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume  |
52 |
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Pages |
121-135 |
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Keywords |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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Abstract |
This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4520 |
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Author |
Fan, F.; Henriksen, C.B.; Porter, J. |
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Title |
Long-term effects of conversion to organic farming on ecosystem services – a model simulation case study and on-farm case study in Denmark |
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Journal Article |
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Year |
2018 |
Publication |
Agroecology and Sustainable Food Systems |
Abbreviated Journal |
Agroecology and Sustainable Food Systems |
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Volume |
42 |
Issue |
5 |
Pages |
504-529 |
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Keywords |
Long-term; conversion; economic value; ecosystem services; organic farming; agricultural policytrade-offs; Greenhouse-Gas Emissions; Former Arable Soils; Daisy Model; Crop; Production; Conventional Agriculture; Straw Incorporation; Production; Systems; Nitrogen Dynamics; Climate-Change; Water-Balance |
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Abstract |
Organic agriculture aims to produce food while establishing an ecological balance to augment ecosystem services (ES) and has been rapidly expanding in the world since the 1980s. Recently, however, in several European countries, including Denmark, organic farmers have converted back to conventional farming. Hence, understanding how agricultural ES are affected by the number of years since conversion to organic farming is imperative for policy makers to guide future agricultural policy. In order to investigate the long-term effects of conversion to organic farming on ES we performed i) a model simulation case study by applying the Daisy model to simulate 14 different conversion scenarios for a Danish farm during a 65 year period with increasing number of years under organic farming, and ii) an on-farm case study in Denmark with one conventional farm, one organic farm under conversion, and three organic farms converted 10, 15 and 58 years ago, respectively. Both the model simulation case study and the on-farm case study showed that non-marketable ES values increased with increasing number of years under organic farming. Trade-offs between marketable and non-marketable ES were not evident, since also marketable ES values generally showed an increasing trend, except when the price difference between organic and conventional products in the model simulation study was the smallest, and when an alfalfa pre-crop in the on-farm case study resulted in a significantly higher level of plant available nitrogen, which boosted the yield and the associated marketable ES of the subsequent winter rye crop. These results indicate a possible benefit of preserving long-term organic farms and could be used to argue for agricultural policy interventions to offset further reduction in the number of organic farms or the land area under organic farming. |
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2018-05-03 |
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2168-3565 |
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CropM, ft_macsur |
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MA @ admin @ |
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5198 |
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Foyer, C.H.; Siddique, K.H.M.; Tai, A.P.K.; Anders, S.; Fodor, N.; Wong, F.-L.; Ludidi, N.; Chapman, M.A.; Ferguson, B.J.; Considine, M.J.; Zabel, F.; Prasad, P.V.V.; Varshney, R.K.; Nguyen, H.T.; Lam, H.-M. |
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Title |
Modelling predicts that soybean is poised to dominate crop production across Africa |
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Journal Article |
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Year |
2019 |
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Plant Cell and Environment |
Abbreviated Journal |
Plant Cell Environ. |
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42 |
Issue |
1 |
Pages |
373-385 |
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Keywords |
Climate-Change; Food Security; Sustainable Intensification; Smallholder; Farmers; Nitrogen-Fixation; Yield; Adaptation; Diversity; Impact; CO2 |
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Abstract |
The superior agronomic and human nutritional properties of grain legumes (pulses) make them an ideal foundation for future sustainable agriculture. Legume-based farming is particularly important in Africa, where small-scale agricultural systems dominate the food production landscape. Legumes provide an inexpensive source of protein and nutrients to African households as well as natural fertilization for the soil. Although the consumption of traditionally grown legumes has started to decline, the production of soybeans (Glycine max Merr.) is spreading fast, especially across southern Africa. Predictions of future land-use allocation and production show that the soybean is poised to dominate future production across Africa. Land use models project an expansion of harvest area, whereas crop models project possible yield increases. Moreover, a seed change in farming strategy is underway. This is being driven largely by the combined cash crop value of products such as oils and the high nutritional benefits of soybean as an animal feed. Intensification of soybean production has the potential to reduce the dependence of Africa on soybean imports. However, a successful “soybean bonanza” across Africa necessitates an intensive research, development, extension, and policy agenda to ensure that soybean genetic improvements and production technology meet future demands for sustainable production. |
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2019-01-10 |
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0140-7791 |
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CropM, ft_macsur |
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MA @ admin @ |
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5215 |
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Author |
Kros, J.; Bakker, M.M.; Reidsma, P.; Kanellopoulos, A.; Jamal Alam, S.; de Vries, W. |
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Title |
Impacts of agricultural changes in response to climate and socioeconomic change on nitrogen deposition in nature reserves |
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Journal Article |
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Year |
2015 |
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Landscape Ecology |
Abbreviated Journal |
Landscape Ecol. |
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30 |
Issue |
5 |
Pages |
871-885 |
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Keywords |
Agricultural adaptation; Climate change; Land use change; Environmental; impact; Farming system; Nitrogen losses; netherlands; diversity; scenario |
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This paper describes the environmental consequences of agricultural adaptation on eutrophication of the nearby ecological network for a study area in the Netherlands. More specifically, we explored (i) likely responses of farmers to changes in climate, technology, policy, and markets; (ii) subsequent changes in nitrogen (N) emissions in responses to farmer adaptations; and (iii) to what extent the emitted N was deposited in nearby nature reserves, in view of the potential impacts on plant species diversity and desired nature targets. For this purpose, a spatially-explicit study at landscape level was performed by integrating the environmental model INITIATOR, the farm model FSSIM, and the land-use model RULEX. We evaluated two alternative scenarios of change in climate, technology, policy, and markets for 2050: one in line with a ‘global economy’ (GE) storyline and the other in line with a ‘regional communities’ (RC) storyline. Results show that the GE storyline resulted in a relatively strong increase in agricultural production compared to the RC storyline. Despite the projected conversions of agricultural land to nature (as part of the implementation of the National Ecological Network), we project an increase in N losses and N deposition due to N emissions in the study area of about 20 %. Even in the RC storyline, with a relatively modest increase in agricultural production and a larger expansion of the nature reserve, the N losses and deposition remain at the current level, whereas a reduction is required. We conclude that more ambitious green policies are needed in view of nature protection. |
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0921-2973 1572-9761 |
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CropM |
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MA @ admin @ |
Serial |
4565 |
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Author |
Mansouri, M.; Destain, M.-F. |
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Title |
Predicting biomass and grain protein content using Bayesian methods |
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Journal Article |
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Year |
2015 |
Publication |
Stochastic Environmental Research and Risk Assessment |
Abbreviated Journal |
Stoch. Environ. Res. Risk Assess. |
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29 |
Issue |
4 |
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1167-1177 |
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Keywords |
crop model; particle filter; prediction; ensemble kalman filter; parameter-estimation; particle filters; decision-support; state estimation; model; nitrogen; navigation; tracking; systems |
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This paper deals with the problem of predicting biomass and grain protein content using improved particle filtering (IPF) based on minimizing the Kullback-Leibler divergence. The performances of IPF are compared with those of the conventional particle filtering (PF) in two comparative studies. In the first one, we apply IPF and PF at a simple dynamic crop model with the aim to predict a single state variable, namely the winter wheat biomass, and to estimate several model parameters. In the second study, the proposed IPF and the PF are applied to a complex crop model (AZODYN) to predict a winter-wheat quality criterion, namely the grain protein content. The results of both comparative studies reveal that the IPF method provides a better estimation accuracy than the PF method. The benefit of the IPF method lies in its ability to provide accuracy related advantages over the PF method since, unlike the PF which depends on the choice of the sampling distribution used to estimate the posterior distribution, the IPF yields an optimum choice of this sampling distribution, which also utilizes the observed data. The performance of the proposed method is evaluated in terms of estimation accuracy, root mean square error, mean absolute error and execution times. |
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1436-3240 1436-3259 |
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CropM |
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MA @ admin @ |
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4664 |
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