| Records |
| Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
| Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
Type |
Journal Article |
| Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
Volume  |
70 |
Issue |
9 |
Pages |
2587-2604 |
| Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
| Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
| Address |
2020-02-14 |
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
0022-0957 |
ISBN |
|
Medium |
Article |
| Area |
|
Expedition |
|
Conference |
|
| Notes |
LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5231 |
| Permanent link to this record |
| |
|
| |
| Author |
Moriondo, M.; Ferrise, R.; Trombi, G.; Brilli, L.; Dibari, C.; Bindi, M. |
| Title |
Modelling olive trees and grapevines in a changing climate |
Type |
Journal Article |
| Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
| Volume |
72 |
Issue |
|
Pages |
387-401 |
| Keywords |
tree crops; climate change; simulation models; crop yield; vitis-vinifera l.; air co2 enrichment; soil-water content; elevated co2; mediterranean basin; cropping systems; growth; yield; carbon; simulation |
| Abstract |
The models developed for simulating olive tree and grapevine yields were reviewed by focussing on the major limitations of these models for their application in a changing climate. Empirical models, which exploit the statistical relationship between climate and yield, and process based models, where crop behaviour is defined by a range of relationships describing the main plant processes, were considered. The results highlighted that the application of empirical models to future climatic conditions (i.e. future climate scenarios) is unreliable since important statistical approaches and predictors are still lacking. While process-based models have the potential for application in climate-change impact assessments, our analysis demonstrated how the simulation of many processes affected by warmer and CO2-enriched conditions may give rise to important biases. Conversely, some crop model improvements could be applied at this stage since specific sub-models accounting for the effect of elevated temperatures and CO2 concentration were already developed. (C) 2014 Elsevier Ltd. All rights reserved. |
| Address |
|
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
1364-8152 |
ISBN |
|
Medium |
Article |
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, ftnotmacsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4691 |
| Permanent link to this record |
| |
|
| |
| Author |
Ma, S.; Lardy, R.; Graux, A.-I.; Ben Touhami, H.; Klumpp, K.; Martin, R.; Bellocchi, G. |
| Title |
Regional-scale analysis of carbon and water cycles on managed grassland systems |
Type |
Journal Article |
| Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
| Volume |
72 |
Issue |
|
Pages |
356-371 |
| Keywords |
carbon flux; eddy flux measurements; model evaluation; pasture simulation model (pasim); water balance; pasture simulation-model; nitrous-oxide emissions; primary productivity npp; comparing global-models; net ecosystem exchange; greenhouse-gas balance; climate-change; agricultural systems; co2 exchange; european grasslands |
| Abstract |
Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system. |
| Address |
2015-10-09 |
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
1364-8152 |
ISBN |
|
Medium |
Article |
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4695 |
| Permanent link to this record |
| |
|
| |
| Author |
Kersebaum, K.C.; Boote, K.J.; Jorgenson, J.S.; Nendel, C.; Bindi, M.; Frühauf, C.; Gaiser, T.; Hoogenboom, G.; Kollas, C.; Olesen, J.E.; Rötter, R.P.; Ruget, F.; Thorburn, P.J.; Trnka, M.; Wegehenkel, M. |
| Title |
Analysis and classification of data sets for calibration and validation of agro-ecosystem models |
Type |
Journal Article |
| Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
| Volume |
72 |
Issue |
|
Pages |
402-417 |
| Keywords |
field experiments; data quality; crop modelling; data requirement; minimum data; software; different climatic zones; soil-moisture sensors; spatial variability; nitrogen dynamics; crop models; systems simulation; wheat yields; elevated co2; growth; field |
| Abstract |
Experimental field data are used at different levels of complexity to calibrate, validate and improve agroecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regarding their suitability for different modelling purposes. Weighting of inputs and variables for testing was set from the aspect of crop modelling. The software allows users to adjust weights according to their specific requirements. Background information is given for the variables with respect to their relevance for modelling and possible uncertainties. Examples are given for data sets of the different classes. The framework helps to assemble high quality data bases, to select data from data bases according to modellers requirements and gives guidelines to experimentalists for experimental design and decide on the most effective measurements to improve the usefulness of their data for modelling, statistical analysis and data assimilation. (C) 2015 Elsevier Ltd. All rights reserved. |
| Address |
|
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
1364-8152 |
ISBN |
|
Medium |
Article |
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4563 |
| Permanent link to this record |
| |
|
| |
| Author |
Ewert, F.; Rötter, R.P.; Bindi, M.; Webber, H.; Trnka, M.; Kersebaum, K.C.; Olesen, J.E.; van Ittersum, M.K.; Janssen, S.; Rivington, M.; Semenov, M.A.; Wallach, D.; Porter, J.R.; Stewart, D.; Verhagen, J.; Gaiser, T.; Palosuo, T.; Tao, F.; Nendel, C.; Roggero, P.P.; Bartošová, L.; Asseng, S. |
| Title |
Crop modelling for integrated assessment of risk to food production from climate change |
Type |
Journal Article |
| Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
| Volume |
72 |
Issue |
|
Pages |
287-303 |
| Keywords |
uncertainty; scaling; integrated assessment; risk assessment; adaptation; crop models; agricultural land-use; change adaptation strategies; farming systems simulation; agri-environmental systems; enrichment face experiment; high-temperature stress; change impacts; nitrogen dynamics; atmospheric co2; spring wheat |
| Abstract |
The complexity of risks posed by climate change and possible adaptations for crop production has called for integrated assessment and modelling (IAM) approaches linking biophysical and economic models. This paper attempts to provide an overview of the present state of crop modelling to assess climate change risks to food production and to which extent crop models comply with IAM demands. Considerable progress has been made in modelling effects of climate variables, where crop models best satisfy IAM demands. Demands are partly satisfied for simulating commonly required assessment variables. However, progress on the number of simulated crops, uncertainty propagation related to model parameters and structure, adaptations and scaling are less advanced and lagging behind IAM demands. The limitations are considered substantial and apply to a different extent to all crop models. Overcoming these limitations will require joint efforts, and consideration of novel modelling approaches. |
| Address |
|
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
1364-8152 |
ISBN |
|
Medium |
Article |
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4521 |
| Permanent link to this record |
