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Brylińska, M.; Sobkowiak, S.; Stefańczyk, E.; Śliwka, J. |
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Title |
Potato cultivation system affects population structure of Phytophthora infestans |
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Journal Article |
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Year |
2016 |
Publication |
Fungal Ecology |
Abbreviated Journal |
Fungal Ecology |
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20 |
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Pages |
132-143 |
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Keywords |
SSR; Population genetic structure; Late blight; Potato; late blight resistance; mating-type; microsatellite markers; phenotypic diversity; sexual reproduction; genotypic diversity; nordic countries; severe outbreaks; sarpo mira; pathogenicity |
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Abstract |
Phytophthora infestans is one of the most destructive potato pathogens. Many factors influence the population structure of P. infestans, including migration, climate and type of potato cultivation. Here, we analyse 365 P. infestans isolates collected from three regions of Poland over three years. We determined mating type, mitochondrial haplotype, resistance to metalaxyl, virulence and polymorphism at 14 simple sequence repeat (SSR) loci. Analysis of SSR markers showed high genetic diversity associated with this population. Model-based structure analysis grouped 299 unique genotypes into four main clusters. The P. infestans isolates collected from the Mlochow region, which has the most intensive level of potato cultivation, formed a distinct cluster, indicating a strong effect of the cultivation system on pathogen population structure. Three clusters contained isolates with frequent presence of three alleles at one locus, which may affect their capacity for sexual reproduction and preserve groups of fit genotypes that propagate asexually. (C) 2016 Elsevier Ltd and The British Mycological Society. |
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1754-5048 |
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CropM, ft_macsur |
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MA @ admin @ |
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4720 |
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Author |
Abdelrahman, H.M.; Olk, D.C.; Dinnes, D.; Ventrella, D.; Miano, T.; Cocozza, C. |
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Title |
Occurrence and abundance of carbohydrates and amino compounds in sequentially extracted labile soil organic matter fractions |
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Journal Article |
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Year |
2016 |
Publication |
Journal of Soils and Sediments |
Abbreviated Journal |
Journal of Soils and Sediments |
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16 |
Issue |
10 |
Pages |
2375-2384 |
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Keywords |
Light fraction; Mobile humic acid; Organic farming; Particulate organic matter; SOM sequential extraction |
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Abstract |
Purpose The study aimed to describe the carbohydrates and amino compounds content in soil, the light fraction (LF), the >53 μm particulate organic matter (POM), and the mobile humic acid (MHA) fraction and to find out whether the carbohydrates and amino compounds can be used to explain the origin of SOM fractions. Materials and methods Soil samples were collected from two agricultural fields managed under organic farming in southern Italy. The LF, the POM, and the MHA were sequentially extracted from each soil sample then characterized. Seven neutral sugars and 19 amino compounds (amino acids and amino sugars) were determined in each soil sample and its correspondent fractions. Results and discussion The MHA contained less carbohydrate than the LF or the POM but its carbohydrates, although dominated by arabinose, were relatively with larger microbial contribution as revealed by the mannose/xylose ratio. The amino compounds were generally less in the LF or the POM than in the MHA, while the fungal (aspartic and serine) and bacterial (alanine and glycine) amino acids were larger in the MHA than in the LF or the POM, underlining the microbial contribution to the MHA. Results from both sites indicated that total carbohydrates content decreased moving from the LF (younger fraction) to the MHA (older fraction), which seems to follow a decomposition continuum of organic matter in the soil-plant system. Conclusions The study showed that the MHA is a labile humified fraction of soil C due to its content of carbohydrates and concluded that the content of carbohydrates and amino compounds in the LF, the POM and the MHA can depict the nature of these fractions and their cycling pattern and response to land management. |
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1439-0108 |
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CropM, ftnotmacsur |
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4992 |
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Cassardo, C.; Andreoli, V. |
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Title |
On the Representativeness of UTOPIA Land Surface Model for Creating a Database of Surface Layer, Vegetation and Soil Variables in Piedmont Vineyards, Italy |
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Journal Article |
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Year |
2019 |
Publication |
Applied Sciences-Basel |
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Applied Sciences-Basel |
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9 |
Issue |
18 |
Pages |
3880 |
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Keywords |
land-surface; UTOPIA; NOAH; GLDAS; micrometeorology; exchanges; processes; vineyards; cabernet-sauvignon; climate-change; wine color; temperature; parameterization; simulations; circulation; balances; moisture; sunlight |
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The main aim of the paper is to show how, and how many, simulations carried out using the Land Surface Model UTOPIA (University of TOrino model of land Process Interaction with Atmosphere) are representative of the micro-meteorological conditions and exchange processes at the atmosphere/biosphere interface, with a particular focus on heat and hydrologic transfers, over an area of the Piemonte (Piedmont) region, NW Italy, which is characterized by the presence of many vineyards. Another equally important aim is to understand how much the quality of the simulation outputs was influenced by the input data, whose measurements are often unavailable for long periods over country areas at an hourly basis. Three types of forcing data were used: observations from an experimental campaign carried out during the 2008, 2009, and 2010 vegetative seasons in three vineyards, and values extracted from the freely available Global Land Data Assimilation System (GLDAS, versions 2.0 and 2.1). Since GLDAS also contains the outputs of the simulations performed using the Land Surface Model NOAH, an additional intercomparison between the two models, UTOPIA and NOAH, both driven by the same GLDAS datasets, was performed. The intercomparisons were performed on the following micro-meteorological variables: net radiation, sensible and latent turbulent heat fluxes, and temperature and humidity of soil. The results of this study indicate that the methodology of employing land surface models driven by a gridded database to evaluate variables of micro-meteorological and agronomic interest in the absence of observations is suitable and gives satisfactory results, with uncertainties comparable to measurement errors, thus, allowing us to also evaluate some time trends. The comparison between GLDAS2.0 and GLDAS2.1 indicates that the latter generally produces simulation outputs more similar to the observations than the former, using both UTOPIA and NOAH models. |
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2020-02-14 |
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CropM, ft_macsur |
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MA @ admin @ |
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5228 |
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