Records |
Author |
Van Oijen, M.; Höglind, M. |
Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
Volume |
207 |
Issue |
3 |
Pages |
627-643 |
Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
Address |
2016-10-31 |
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Thesis |
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Place of Publication |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0014-2336 |
ISBN |
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Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4820 |
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Author |
Legarrea, S.; Betancourt, M.; Plaza, M.; Fraile, A.; García-Arenal, F.; Fereres, A. |
Title |
Dynamics of nonpersistent aphid-borne viruses in lettuce crops covered with UV-absorbing nets |
Type |
Journal Article |
Year |
2012 |
Publication |
Virus Research |
Abbreviated Journal |
Virus Res. |
Volume |
165 |
Issue |
1 |
Pages |
1-8 |
Keywords |
Absorption; Animals; Aphids/growth & development/radiation effects/*virology; Insect Control/instrumentation/*methods; Insect Vectors/growth & development/radiation effects/*virology; Lettuce/parasitology/*virology; Plant Diseases/prevention & control/*virology; Plant Viruses/*physiology; Protective Devices/virology; Ultraviolet Rays |
Abstract |
Aphid-transmitted viruses frequently cause severe epidemics in lettuce grown under Mediterranean climates. Spatio-temporal dynamics of aphid-transmitted viruses and its vector were studied on lettuce (Lactuca sativa L.) grown under tunnels covered by two types of nets: a commercial UV-absorbing net (Bionet) and a Standard net. A group of plants infected by Cucumber mosaic virus (CMV, family Bromoviridae, genus Cucumovirus) and Lettuce mosaic virus (LMV, family Potyviridae, genus Potyvirus) was transplanted in each plot. The same virus-infected source plants were artificially infested by the aphid Macrosiphum euphorbiae (Thomas). Secondary spread of insects was weekly monitored and plants were sampled for the detection of viruses every two weeks. In 2008, the infection rate of both CMV and LMV were lower under the Bionet than under the Standard cover, probably due to the lower population density and lower dispersal rate achieved by M. euphorbiae. However, during spring of 2009, significant differences in the rate of infection between the two covers were only found for LMV six weeks after transplant. The spatial distribution of the viruses analysed by SADIE methodology was “at random”, and it was not associated to the spatial pattern of the vector. The results obtained are discussed analyzing the wide range of interactions that occurred among UV-radiation, host plant, viruses, insect vector and environmental conditions. Our results show that UV-absorbing nets can be recommended as a component of an integrated disease management program to reduce secondary spread of lettuce viruses, although not as a control measure on its own. |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0168-1702 |
ISBN |
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Medium |
Article |
Area |
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Notes |
CropM |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4475 |
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Author |
Francone, C.; Katul, G.G.; Cassardo, C.; Richiardone, R. |
Title |
Turbulent transport efficiency and the ejection-sweep motion for momentum and heat on sloping terrain covered with vineyards |
Type |
Journal Article |
Year |
2012 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
Volume |
162-163 |
Issue |
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Pages |
98-107 |
Keywords |
coherent motion; cumulant expansions; heat and momentum transfer; sloping terrain; vineyards; planar fit method; boundary-layers; reynolds stress; dense canopies; plant canopies; flow; fluxes; forest; fields; hills |
Abstract |
In boundary layer flows, it is now recognized that the net momentum and mass exchange rates are dominated by the statistical properties of ejecting and sweeping motion often linked to the presence of coherent turbulent structures. Over vineyards, three main factors impact the transport properties of such coherent motion: presence of sloping terrain, variations in leaf area index (LAI) during the growing season, and thermal stratification. The effect of these factors on momentum and heat transport is explored for three vineyard sites situated on different slopes. All three sites experience similar seasonal variation in LAI and mean wind conditions. The analysis is carried out using a conventional quadrant analysis technique and is tested against two models approximating the joint probability density function (JPDF) of the flow variables. It is demonstrated that a Gaussian JPDF explains much of the updraft and downdraft statistical contributions to heat and momentum transport efficiencies for all three sites. An incomplete or truncated third-order cumulant expansion method (ICEM) of the JPDF that retains only the mixed moments and ignores the skewness contributions describes well all the key properties of ejections and sweeps for all slopes, LAI, and stability classes. The implication of these findings for diagnosing potential failures of gradient-diffusion theory over complex terrain is discussed. Because only lower order moments are needed to describe the main characteristics of the JPDF, the use of the Moving Equilibrium Hypothesis (MEH) to predict these moments from the locally measured sensible heat flux and friction velocity is explored. Provided the planar fit coordinate transformation is applied to the data, the MEH can describe these statistical moments at all three sites regardless of terrain slopes and LAI values. (C) 2012 Elsevier B.V. All rights reserved. |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0168-1923 |
ISBN |
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Article |
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Notes |
CropM |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4471 |
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Author |
Shrestha, S.; Abdalla, M.; Hennessy, T.; Forristal, D.; Jones, M.B. |
Title |
Irish farms under climate change – is there a regional variation on farm responses? |
Type |
Journal Article |
Year |
2015 |
Publication |
Journal of Agricultural Science |
Abbreviated Journal |
J. Agric. Sci. |
Volume |
153 |
Issue |
03 |
Pages |
385-398 |
Keywords |
change impacts; elevated co2; potential impacts; maize production; united-states; winter-wheat; plant-growth; adaptation; ireland; yield |
Abstract |
The current paper aims to determine regional impacts of climate change on Irish farms examining the variation in farm responses. A set of crop growth models were used to determine crop and grass yields under a baseline scenario and a future climate scenario. These crop and grass yields were used along with farm-level data taken from the Irish National Farm Survey in an optimizing farm-level (farm-level linear programming) model, which maximizes farm profits under limiting resources. A change in farm net margins under the climate change scenario compared to the baseline scenario was taken as a measure to determine the effect of climate change on farms. The growth models suggested a decrease in cereal crop yields (up to 9%) but substantial increase in yields of forage maize (up to 97%) and grass (up to 56%) in all regions. Farms in the border, midlands and south-east regions suffered, whereas farms in all other regions generally fared better under the climate change scenario used in the current study. The results suggest that there is a regional variability between farms in their responses to the climate change scenario. Although substituting concentrate feed with grass feeds is the main adaptation on all livestock farms, the extent of such substitution differs between farms in different regions. For example, large dairy farms in the south-east region adopted total substitution of concentrate feed while similar dairy farms in the south-west region opted to replace only 0.30 of concentrate feed. Farms in most of the regions benefitted from increasing stocking rate, except for sheep farms in the border and dairy farms in the south-east regions. The tillage farms in the mid-east region responded to the climate change scenario by shifting arable production to beef production on farms. |
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English |
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Edition |
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ISSN |
0021-8596 1469-5146 |
ISBN |
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Article |
Area |
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Notes |
CropM, TradeM |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4542 |
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Author |
Dáder, B.; Gwynn-Jones, D.; Moreno, A.; Winters, A.; Fereres, A. |
Title |
Impact of UV-A radiation on the performance of aphids and whiteflies and on the leaf chemistry of their host plants |
Type |
Journal Article |
Year |
2014 |
Publication |
Journal of Photochemistry and Photobiology B: Biology |
Abbreviated Journal |
J. Photochem. Photobiol. B |
Volume |
138 |
Issue |
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Pages |
307-316 |
Keywords |
Amino Acids/analysis; Animals; Aphids/*radiation effects; Capsicum/metabolism/parasitology/radiation effects; Carbohydrates/analysis; Chromatography, High Pressure Liquid; Female; Fertility/radiation effects; Hemiptera/*radiation effects; Mass Spectrometry; Phenols/analysis/chemistry; Plant Leaves/metabolism/parasitology/radiation effects; Plants/parasitology/*radiation effects; Proteins/analysis; Solanum melongena/metabolism/parasitology/radiation effects; Time Factors; *Ultraviolet Rays; Eggplant; Insect pests; Pepper; Plant-insect interactions; UV-blocking covers |
Abstract |
Ultraviolet (UV) radiation directly regulates a multitude of herbivore life processes, in addition to indirectly affecting insect success via changes in plant chemistry and morphogenesis. Here we looked at plant and insect (aphid and whitefly) exposure to supplemental UV-A radiation in the glasshouse environment and investigated effects on insect population growth. Glasshouse grown peppers and eggplants were grown from seed inside cages covered by novel plastic filters, one transparent and the other opaque to UV-A radiation. At a 10-true leaf stage for peppers (53 days) and 4-true leaf stage for eggplants (34 days), plants were harvested for chemical analysis and infested by aphids and whiteflies, respectively. Clip-cages were used to introduce and monitor the insect fitness and populations of the pests studied. Insect pre-reproductive period, fecundity, fertility and intrinsic rate of natural increase were assessed. Crop growth was monitored weekly for 7 and 12 weeks throughout the crop cycle of peppers and eggplants, respectively. At the end of the insect fitness experiment, plants were harvested (68 days and 18-true leaf stage for peppers, and 104 days and 12-true leaf stage for eggplants) and leaves analysed for secondary metabolites, soluble carbohydrates, amino acids, total proteins and photosynthetic pigments. Our results demonstrate for the first time, that UV-A modulates plant chemistry with implications for insect pests. Both plant species responded directly to UV-A by producing shorter stems but this effect was only significant in pepper whilst UV-A did not affect the leaf area of either species. Importantly, in pepper, the UV-A treated plants contained higher contents of secondary metabolites, leaf soluble carbohydrates, free amino acids and total content of protein. Such changes in tissue chemistry may have indirectly promoted aphid performance. For eggplants, chlorophylls a and b, and carotenoid levels decreased with supplemental UV-A over the entire crop cycle but UV-A exposure did not affect leaf secondary metabolites. However, exposure to supplemental UV-A had a detrimental effect on whitefly development, fecundity and fertility presumably not mediated by plant cues as compounds implied in pest nutrition – proteins and sugars – were unaltered. |
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English |
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Edition |
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ISSN |
1011-1344 |
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CropM |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4517 |
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