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Sharif, B.; Makowski, D.; Plauborg, F.; Olesen, J.E. |
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Title |
Comparison of regression techniques to predict response of oilseed rape yield to variation in climatic conditions in Denmark |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume ![sorted by Volume (numeric) field, ascending order (up)](img/sort_asc.gif) |
82 |
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Pages |
11-20 |
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Keywords |
Winter oilseed rape; Statistical models; Yield; Climate; Regression |
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Abstract |
Highlights • Regularization techniques for regression outperformed the classical regression techniques in predicting crop yields. • Different regression techniques with similar prediction accuracy showed different responses of major climatic variables to crop yield. • The regression models showed some responses of crop yield to climatic conditions that is mostly absent in process based crop models. Abstract Statistical regression models represent alternatives to process-based dynamic models for predicting the response of crop yields to variation in climatic conditions. Regression models can be used to quantify the effect of change in temperature and precipitation on yields. However, it is difficult to identify the most relevant input variables that should be included in regression models due to the high number of candidate variables and to their correlations. This paper compares several regression techniques for modeling response of winter oilseed rape yield to a high number of correlated input variables. Several statistical regression methods were fitted to a dataset including 689 observations of winter oilseed rape yield from replicated field experiments conducted in 239 sites in Denmark, covering nearly all regions of the country from 1992 to 2013. Regression methods were compared by cross-validation. The regression methods leading to the most accurate yield predictions were Lasso and Elastic Net, and the least accurate methods were ordinary least squares and stepwise regression. Partial least squares and ridge regression methods gave intermediate results. The estimated relative yield change for a +1°C temperature increase during flowering was estimated to range between 0 and +6 %, depending on choice of regression method. Precipitation was found to have an adverse effect on yield during autumn and winter. It was estimated that an increase in precipitation of +1 mm/day would result in a relative yield change ranging from 0 to −4 %. Soil type was also important for crop yields with lower yields on sandy soils compared to loamy soils. Later sowing was found to result in increased crop yield. The estimated effect of climate on yield was highly sensitive to the chosen regression method. Regression models showing similar performance led in some cases to different conclusions with respect to effect of temperature and precipitation. Hence, it is recommended to apply an ensemble of regression models, in order to account for the sensitivity of the data driven models for projecting crop yield under climate change. |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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4966 |
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Author |
Zhang, S.; Tao, F.; Zhang, Z. |
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Title |
Uncertainty from model structure is larger than that from model parameters in simulating rice phenology in China |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume ![sorted by Volume (numeric) field, ascending order (up)](img/sort_asc.gif) |
87 |
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30-39 |
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Keywords |
Crop model, Extreme weather, Impacts, Rice development rate, Uncertainty; Climate-Change; Growth Duration; Crop Model; Ceres-Rice; Wheat; Temperature; Impact; Yield; Optimization; Performance |
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Abstract |
Rice models have been widely used in simulating and predicting rice phenology in contrasting climate zones, however the uncertainties from model structure (different equations or models) and/or model parameters were rarely investigated. Here, five rice phenological models/modules (Le., CERES-Rice, ORYZA2000, RCM, Beta Model and SIMRIW) were applied to simulate rice phenology at 23 experimental stations from 1992 to 2009 in two major rice cultivation regions of China: the northeastern China and the southwestern China. To investigate the uncertainties from model biophysical parameters, each model was run with randomly perturbed 50 sets of parameters. The results showed that the median of ensemble simulations were better than the simulation by most models. Models couldn’t simulate well in some specific years despite of parameters optimization, suggesting model structure limit model performance in some cases. The models adopting accumulative thermal time function (e.g., CERES-Rice and ORYZA2000) had better performance in the southwestern China, in contrast, those adopting exponential function (e.g., Beta model and RCM model) had better performance in the northeastern China. In northeastern China, the contribution of model structure and model parameters to model total variance was, respectively, about 55.90% and 44.10% in simulating heading date, and about 75.43% and 24.57% in simulating maturity date. In the southwestern China, the contribution of model structure and model parameters to model total variance was, respectively, about 79.97% and 27.03% in simulating heading date, about 92.15% and 7.85% in simulating maturity date. Uncertainty from model structure was the most relevant source. The results highlight that the temperature response functions of rice development rate under extreme climate conditions should be improved based on environment-controlled experimental data. |
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2017-08-07 |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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5170 |
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Kuhnert, M.; Yeluripati, J.; Smith, P.; Hoffmann, H.; van Oijen, M.; Constantin, J.; Coucheney, E.; Dechow, R.; Eckersten, H.; Gaiser, T.; Grosz, B.; Haas, E.; Kersebaum, K.-C.; Kiese, R.; Klatt, S.; Lewan, E.; Nendel, C.; Raynal, H.; Sosa, C.; Specka, X.; Teixeira, E.; Wang, E.; Weihermüller, L.; Zhao, G.; Zhao, Z.; Ogle, S.; Ewert, F. |
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Title |
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands |
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Journal Article |
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2016 |
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European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
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Volume ![sorted by Volume (numeric) field, ascending order (up)](img/sort_asc.gif) |
88 |
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41-52 |
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Net primary production; NPP; Scaling; Extreme events; Crop modelling; Climate Data; aggregation |
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For spatial crop and agro-systems modelling, there is often a discrepancy between the scale of measured driving data and the target resolution. Spatial data aggregation is often necessary, which can introduce additional uncertainty into the simulation results. Previous studies have shown that climate data aggregation has little effect on simulation of phenological stages, but effects on net primary production (NPP) might still be expected through changing the length of the growing season and the period of grain filling. This study investigates the impact of spatial climate data aggregation on NPP simulation results, applying eleven different models for the same study region (∼34,000 km2), situated in Western Germany. To isolate effects of climate, soil data and management were assumed to be constant over the entire study area and over the entire study period of 29 years. Two crops, winter wheat and silage maize, were tested as monocultures. Compared to the impact of climate data aggregation on yield, the effect on NPP is in a similar range, but is slightly lower, with only small impacts on averages over the entire simulation period and study region. Maximum differences between the five scales in the range of 1–100 km grid cells show changes of 0.4–7.8% and 0.0–4.8% for wheat and maize, respectively, whereas the simulated potential NPP averages of the models show a wide range (1.9–4.2 g C m−2 d−1 and 2.7–6.1 g C m−2 d−1for wheat and maize, respectively). The impact of the spatial aggregation was also tested for shorter time periods, to see if impacts over shorter periods attenuate over longer periods. The results show larger impacts for single years (up to 9.4% for wheat and up to 13.6% for maize). An analysis of extreme weather conditions shows an aggregation effect in vulnerability up to 12.8% and 15.5% between the different resolutions for wheat and maize, respectively. Simulations of NPP averages over larger areas (e.g. regional scale) and longer time periods (several years) are relatively insensitive to climate data. |
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2016-09-13 |
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Newsletter July |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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4775 |
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Author |
Makowski, D. |
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Title |
A simple Bayesian method for adjusting ensemble of crop model outputs to yield observations |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume ![sorted by Volume (numeric) field, ascending order (up)](img/sort_asc.gif) |
88 |
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76-83 |
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Keywords |
Bayesian method; Climate change; Ensemble modelling; Uncertainty; Yield; Linear-Approach; Climate-Change; CO2 |
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Multi-model forecasting has drawn some attention in crop science for evaluating effect of climate change on crop yields. The principle is to run several individual process-based crop models under several climate scenarios in order to generate ensembles of output values. This paper describes a simple Bayesian method – called Bayes linear method- for updating ensemble of crop model outputs using yield observations. The principle is to summarize the ensemble of crop model outputs by its mean and variance, and then to adjust these two quantities to yield observations in order to reduce uncertainty. The adjusted mean and variance combine two sources of information, i.e., the ensemble of crop model outputs and the observations. Interestingly, with this method, observations collected under a given climate scenario can be used to adjust mean and variance of the model ensemble under a different scenario. Another advantage of the proposed method is that it does not rely on a separate calibration of each individual crop model. The uncertainty reduction resulting from the adjustment of an ensemble of crop models to observations was assessed in a numerical application. The implementation of the Bayes linear method systematically reduced uncertainty, but the results showed the effectiveness of this method varied in function of several factors, especially the accuracy of the yield observation, and the covariance between the crop model output and the observation. (C) 2015 Elsevier B.V. All rights reserved. |
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2017-08-07 |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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5171 |
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Author |
Cirillo, V.; Masin, R.; Maggio, A.; Zanin, G. |
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Title |
Crop-weed interactions in saline environments |
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Journal Article |
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Year |
2018 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume ![sorted by Volume (numeric) field, ascending order (up)](img/sort_asc.gif) |
99 |
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51-61 |
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Salinity; Weeds; Abiotic stress; Crop management; Salt stress; Echinochloa-Crus-Galli; Portulaca Oleracea L.; Seed-Germination; Soil-Salinity; Salt Tolerance; Stress Tolerance; Chenopodium-Album; Chemical-Composition; Southern Australia; Microbial Biomass |
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Soil salinization is one of the most critical environmental factors affecting crop yield. It is estimated that 20% of cultivated land and 33% of irrigated agricultural land are affected by salinity. In the last decades, considerable effort to manage saline agro-ecosystems has focused on 1) controlling soil salinity to minimize/reduce the accumulation of salts in the root zone and 2) improving plants ability to cope with osmotic and ionic stress. Less attention has been given to other components of the agro-ecosystem including weed populations, which also react and adapt to soil salinization and indirectly affect plant growth and yield. Weeds represent an increasing challenge for crop systems since they have high genetic resilience and adaptation ability to adverse environmental conditions such as soil salinization. In this review, we assess current knowledge on salinity tolerance of weeds in agricultural contexts and discuss critical components of crop-weed interactions that may increase weeds competitiveness under salinity. Compared to crop species, weeds generally exhibit greater salt tolerance due to high intraspecific variability, associated with diverse physiological adaptation mechanisms (e.g. phenotipic plasticity, seed heteromorphism, allelopathy). Weed competitiveness in saline soils may be enhanced by their earlier emergence, faster growth rates and synergies occurring between soil salts and allelochemicals released by weeds. In the future, a better understanding of crop-weed relationships and molecular, physiological and agronomic stress responses under salinity is essential to design efficient strategies to achieve weed control under altered climatic and environmental conditions. |
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2018-09-20 |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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5209 |
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