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Rötter, R. P., Appiah, M., Fichtler, E., Kersebaum, K. C., Trnka, M., & Hoffmann, M. P. (2018). Linking modelling and experimentation to better capture crop impacts of agroclimatic extremes-A review. Field Crops Research, 221, 142–156.
Abstract: Climate change implies higher frequency and magnitude of agroclimatic extremes threatening plant production and the provision of other ecosystem services. This review is motivated by a mismatch between advances made regarding deeper understanding of abiotic stress physiology and its incorporation into ecophysiological models in order to more accurately quantifying the impacts of extreme events at crop system or higher aggregation levels. Adverse agroclimatic extremes considered most detrimental to crop production include drought, heat, heavy rains/hail and storm, flooding and frost, and, in particular, combinations of them. Our core question is: How have and could empirical data be exploited to improve the capability of widely used crop simulation models in assessing crop impacts of key agroclimatic extremes for the globally most important grain crops? To date there is no comprehensive review synthesizing available knowledge for a broad range of extremes, grain crops and crop models as a basis for identifying research gaps and prospects. To address these issues, we selected eight major grain crops and performed three systematic reviews using SCOPUS for period 1995-2016. Furthermore, we amended/complemented the reviews manually and performed an in-depth analysis using a sub-sample of papers. Results show that by far the majority of empirical studies (1631 out of 1772) concentrate on the three agroclimatic extremes drought, heat and heavy rain and on the three major staples wheat, maize and rice (1259 out of 1772); the concentration on just a few has increased over time. With respect to modelling studies two model families, i.e. CERES-DSSAT and APSIM, are dearly dominating for wheat and maize; for rice, ORYZA2000 and CERES-Rice predominate and are equally strong. For crops other than maize and wheat the number of studies is small. Empirical and modelling papers don’t differ much in the proportions the various extreme events are dealt with drought and heat stress together account for approx. 80% of the studies. There has been a dramatic increase in the number of papers, especially after 2010. As a way forward, we suggest to have very targeted and well-designed experiments on the specific crop impacts of a given extreme as well as of combinations of them. This in particular refers to extremes addressed with insufficient specificity (e.g. drought) or being under-researched in relation to their economic importance (heavy rains/storm and flooding). Furthermore, we strongly recommend extending research to crops other than wheat, maize and rice.
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Hidy, D., Barcza, Z., Haszpra, L., Churkina, G., Pintér, K., & Nagy, Z. (2012). Development of the Biome-BGC model for simulation of managed herbaceous ecosystems. Ecol. Model., 226, 99–119.
Abstract: Apart from measurements, numerical models are the most convenient instruments to analyze the carbon and water balance of terrestrial ecosystems and their interactions with changing environmental conditions. The process-based Biome-BGC model is widely used to simulate the storage and flux of water, carbon, and nitrogen within the vegetation, litter, and soil of unmanaged terrestrial ecosystems. Considering herbaceous vegetation related simulations with Biome-BGC, soil moisture and growing season control on ecosystem functioning is inaccurate due to the simple soil hydrology and plant phenology representation within the model. Consequently, Biome-BGC has limited applicability in herbaceous ecosystems because (1) they are usually managed; (2) they are sensitive to soil processes, most of all hydrology; and (3) their carbon balance is closely connected with the growing season length. Our aim was to improve the applicability of Biome-BGC for managed herbaceous ecosystems by implementing several new modules, including management. A new index (heatsum growing season index) was defined to accurately estimate the first and the final days of the growing season. Instead of a simple bucket soil sub-model, a multilayer soil sub-model was implemented, which can handle the processes of runoff, diffusion and percolation. A new module was implemented to simulate the ecophysiological effect of drought stress on plant mortality. Mowing and grazing modules were integrated in order to quantify the functioning of managed ecosystems. After modifications, the Biome-BGC model was calibrated and validated using eddy covariance-based measurement data collected in Hungarian managed grassland ecosystems. Model calibration was performed based on the Bayes theorem. As a result of these developments and calibration, the performance of the model was substantially improved. Comparison with measurement-based estimate showed that the start and the end of the growing season are now predicted with an average accuracy of 5 and 4 days instead of 46 and 85 days as in the original model. Regarding the different sites and modeled fluxes (gross primary production, total ecosystem respiration, evapotranspiration), relative errors were between 18-60% using the original model and 10-18% using the developed model; squares of the correlation coefficients were between 0.02-0.49 using the original model and 0.50-0.81 using the developed model. (c) 2011 Elsevier B.V. All rights reserved.
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Sanz-Cobena, A., Lassaletta, L., Gamier, J., Smith, P., Sanz-Cobena, A., Lassaletta, L., et al. (2017). Mitigation and quantification of greenhouse gas emissions in Mediterranean cropping systems. Agriculture, Ecosystems & Environment, 238, 1–4.
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Sandor, R., Ehrhardt, F., Grace, P., Recous, S., Smith, P., Snow, V., et al. (2020). Ensemble modelling of carbon fluxes in grasslands and croplands. Field Crops Research, 252, 107791.
Abstract: Croplands and grasslands are agricultural systems that contribute to land–atmosphere exchanges of carbon (C). We evaluated and compared gross primary production (GPP), ecosystem respiration (RECO), net ecosystem exchange (NEE) of CO2, and two derived outputs – C use efficiency (CUE=-NEE/GPP) and C emission intensity (IntC= -NEE/Offtake [grazed or harvested biomass]). The outputs came from 23 models (11 crop-specific, eight grassland-specific, and four models covering both systems) at three cropping sites over several rotations with spring and winter cereals, soybean and rapeseed in Canada, France and India, and two temperate permanent grasslands in France and the United Kingdom. The models were run independently over multi-year simulation periods in five stages (S), either blind with no calibration and initialization data (S1), using historical management and climate for initialization (S2), calibrated against plant data (S3), plant and soil data together (S4), or with the addition of C and N fluxes (S5). Here, we provide a framework to address methodological uncertainties and contextualize results. Most of the models overestimated or underestimated the C fluxes observed during the growing seasons (or the whole years for grasslands), with substantial differences between models. For each simulated variable, changes in the multi-model median (MMM) from S1 to S5 was used as a descriptor of the ensemble performance. Overall, the greatest improvements (MMM approaching the mean of observations) were achieved at S3 or higher calibration stages. For instance, grassland GPP MMM was equal to 1632 g C m−2 yr-1 (S5) while the observed mean was equal to 1763 m-2 yr-1 (average for two sites). Nash-Sutcliffe modelling efficiency coefficients indicated that MMM outperformed individual models in 92.3 % of cases. Our study suggests a cautious use of large-scale, multi-model ensembles to estimate C fluxes in agricultural sites if some site-specific plant and soil observations are available for model calibration. The further development of crop/grassland ensemble modelling will hinge upon the interpretation of results in light of the way models represent the processes underlying C fluxes in complex agricultural systems (grassland and crop rotations including fallow periods).
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Klosterhalfen, A., Herbst, M., Weihermueller, L., Graf, A., Schmidt, M., Stadler, A., et al. (2017). Multi-site calibration and validation of a net ecosystem carbon exchange model for croplands. Ecol. Model., 363, 137–156.
Abstract: Croplands play an important role in the carbon budget of many regions. However, the estimation of their carbon balance remains difficult due to diversity and complexity of the processes involved. We report the coupling of a one-dimensional soil water, heat, and CO2 flux model (SOILCO2), a pool concept of soil carbon turnover (RothC), and a crop growth module (SUCROS) to predict the net ecosystem exchange (NEE) of carbon. The coupled model, further referred to as AgroC, was extended with routines for managed grassland as well as for root exudation and root decay. In a first step, the coupled model was applied to two winter wheat sites and one upland grassland site in Germany. The model was calibrated based on soil water content, soil temperature, biometric, and soil respiration measurements for each site, and validated in terms of hourly NEE measured with the eddy covariance technique. The overall model performance of AgroC was sufficient with a model efficiency above 0.78 and a correlation coefficient above 0.91 for NEE. In a second step, AgroC was optimized with eddy covariance NEE measurements to examine the effect of different objective functions, constraints, and data-transformations on estimated NEE. It was found that NEE showed a distinct sensitivity to the choice of objective function and the inclusion of soil respiration data in the optimization process. In particular, both positive and negative day- and nighttime fluxes were found to be sensitive to the selected optimization strategy. Additional consideration of soil respiration measurements improved the simulation of small positive fluxes remarkably. Even though the model performance of the selected optimization strategies did not diverge substantially, the resulting cumulative NEE over simulation time period differed substantially. Therefore, it is concluded that data transformations, definitions of objective functions, and data sources have to be considered cautiously when a terrestrial ecosystem model is used to determine NEE by means of eddy covariance measurements. (C) 2017 Elsevier B.V. All rights reserved.
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