Minet, J., Laloy, E., Tychon, B., & François, L. (2014). Bayesian inference of a dynamic vegetation model for grassland. FACCE MACSUR Mid-term Scientific Conference, 3(S) Sassari, Italy.
Abstract: As a part of the MACSUR task L2.4, we probabilistically calibrated the CARAIB dynamic vegetation model by Markov chain Monte Carlo (MCMC) simulation with the DREAMZS sampler. CARAIB is a mechanistic model that calculates the carbon assimilation of the vegetation as a function of the soil and climatic conditions, and can thus be used for simulating grassland production under cutting or grazing management. Bayesian model inversion was performed at 4 grassland sites across Europe: Oensingen, CH; Grillenburg, DE; Laqueuille, FR and Monte-Bodone, IT. Four daily measured variables from these sites: the Gross Primary Productivity (GPP), Net Ecosystem Exchange (NEE), Evapotranspiration (ET) and Soil Water Content (SWC) were used to sample 10 parameters related to rooting depth, stomatal conductance, specific leaf area, carbon-nitrogen ratio and water stresses. The maximized likelihood function therefore involved four objectives, whereas the applied Bayesian framework allowed for assessing the so called parameter posterior probability density function (pdf), which quantifies model parameter uncertainty caused by measurement and model errors. Sampling trials were performed using merged data from all sites (all-sites-sampling) and for each site (site-specific sampling) separately. The derived posterior parameter pdfs from the all-sites sampling and site-specific sampling runs showed differences in relation with the specificities of each site. Analysis of these distributions also revealed model sensitivity to parameters conditioned on the measured data, as well as parameter correlations.
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François, L., Jacquemin, I., Fontaine, C., Minet, J., Dury, M., & Tychon, B. (2014). Implementing agricultural land-use in the CARAIB dynamic vegetation model. FACCE MACSUR Mid-term Scientific Conference, 3(S) Sassari, Italy.
Abstract: CARAIB (Dury et al., 2011) is a state-of-the-art dynamic vegetation model with various modules dealing with (i) soil hydrology, (ii) photosynthesis/stomatal regulation, (iii) carbon allocation and biomass growth, (iv) litter/soil carbon dynamics, (v) vegetation cover dynamics, (vi) seed dispersal, and (vii) vegetation fires. Climate and atmospheric CO2 are the primary inputs. The model calculates all major water and CO2/carbon fluxes and pools. It can be run with plant functional types or species (up to 100 different species) at various spatial scales, from the municipality to country or continental levels. Within the VOTES project (Fontaine et al., 2013), the model has been improved to include crops and meadows, and some modules have been written to translate model outputs into quantitative indicators of ecosystem services (e.g., evaluate crop yield from net primary productivity or calculate soil erosion from runoff, slope, grown species and various soil attributes). The model was run over an area covering four municipalities in central Belgium, where land-use is dominated by crops, meadows, housing and some forests and was introduced in the model at the land parcel level. Simulations were also performed for the future. In these simulations, CARAIB was combined with the Aporia Agent-Based Model, to project land-use changes up to 2050. This approach is currently extended within the MASC project (funded by Belgian Science Policy, BELSPO) to the whole Belgian territory (at 1 km2) and to Western Europe (at 20 km x 20 km).
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Ruiz-Ramos, M., Ferrise, R., Rodríguez, A., Lorite, I. J., Bindi, M., Carter, T. R., et al. (2017). Applying adaptation response surfaces for managing wheat under perturbed climate and elevated CO2 in a Mediterranean environment (Vol. 1ß).
Abstract: This study developed Adaptation Response Surfaces and applied them to a study case in North East Spain on winter crops adaptation, using rainfed winter wheat as reference crop. Crop responses to perturbed temperature, precipitation and CO2 were simulated by an ensemble of crop models. A set of combined changes on cultivars (on vernalisation requirements and phenology) and management (on sowing date and irrigation) were considered as adaptation options and simulated by the crop model ensemble. The discussion focused on two main issues: 1) the recommended adaptation options for different soil types and perturbation levels, and 2) the need of applying our current knowledge (AOCK) when building a crop model ensemble. The study has been published Agricultural Systems (Available online 25 January 2017, https://doi.org/10.1016/j.agsy.2017.01.009 ), and the text below consists on extracts from that paper.
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Sándor, R., Ma, S., Acutis, M., Barcza, Z., Ben Touhami, H., Doro, L., et al. (2015). Uncertainty in simulating biomass yield and carbon–water fluxes from grasslands under climate change. Advances in Animal Biosciences, 6(01), 49–51.
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Lessire, F., Hornick, J. L., Minet, J., & Dufrasne, I. (2015). Rumination time, milk yield, milking frequency of grazing dairy cows milked by a mobile automatic system during mild heat stress. Advances in Animal Biosciences, 6(01), 12–14.
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