Abstract: Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes.

Abstract: In order to maintain food security and sustainability of production under climate change, interdisciplinary and international collaboration in research is essential. In the EU, knowledge hubs are important funding instruments for the development of an interconnected European Research Area. Here, network analysis was used to assess whether the pilot knowledge hub MACSUR has affected interdisciplinary collaboration, using co-authorship of peer reviewed articles as a measure of collaboration. The broad community of all authors identified as active in the field of agriculture and climate change was increasingly well connected over the period studied. Between knowledge hub members, changes in network parameters suggest an increase in collaborative interaction beyond that expected due to network growth, and greater than that found in the broader community. Given that interdisciplinary networks often take several years to have an impact on research outputs, these changes within the relatively new MACSUR community provide evidence that the knowledge hub structure has been effective in stimulating collaboration. However, analysis showed that knowledge hub partners were initially well-connected, suggesting that the initiative may have gathered together researchers with particular resources or inclinations towards collaborative working. Long term, consistent funding and ongoing reflection to improve networking structures may be necessary to sustain the early positive signs from MACSUR, to extend its success to a wider community of researchers, or to repeat it in less connected fields of science. Tackling complex challenges such as climate change will require research structures that can effectively support and utilise the diversity of talents beyond the already well-connected core of scientists at major research institutes. But network research shows that this core, well-connected group are vital brokers in achieving wider integration.

Abstract: Regional agricultural yield assessments allowing for weather effect quantifications are a valuable basis for deriving scenarios of climate change effects and developing adaptation strategies. Assessing weather effects by statistical methods is a classical approach, but for obtaining robust results many details deserve attention and require individual decisions as is demonstrated in this paper. We evaluated regression models for annual yield changes of winter wheat and silage maize in more than 300 German counties and revised them to increase their predictive power. A major effort of this study was, however, aggregating separately estimated time series models (STSM) into panel data models (PDM) based on cluster analyses. The cluster analyses were based on the per-county estimates of STSM parameters. The original STSM formulations (adopted from a parallel study) contained also the non-meteorological input variables acreage and fertilizer price. The models were revised to use only weather variables as estimation basis. These consisted of time aggregates of radiation, precipitation, temperature, and potential evapotranspiration. Altering the input variables generally increased the predictive power of the models as did their clustering into PDM. For each crop, five alternative clusterings were produced by three different methods, and similarities between their spatial structures seem to confirm the existence of objective clusters about common model parameters. Observed smooth transitions of STSM parameter values in space suggest, however, spatial autocorrelation effects that could also be modeled explicitly. Both clustering and autocorrelation approaches can effectively reduce the noise in parameter estimation through targeted aggregation of input data. (C) 2015 Elsevier B.V. All rights reserved.