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Author |
Van Oosten, M.J.; Sharkhuu, A.; Batelli, G.; Bressan, R.A.; Maggio, A. |
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Title |
The Arabidopsis thaliana mutant air1 implicates SOS3 in the regulation of anthocyanins under salt stress |
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Journal Article |
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Year |
2013 |
Publication |
Plant Molecular Biology |
Abbreviated Journal |
Plant Mol. Biol. |
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Volume |
83 |
Issue |
4-5 |
Pages |
405-415 |
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Keywords |
Anthocyanins/analysis/*metabolism; Arabidopsis/drug effects/*genetics/physiology/radiation effects; Arabidopsis Proteins/*genetics/metabolism; Basic-Leucine Zipper Transcription Factors/*genetics/metabolism; Flavonoids/metabolism; *Gene Expression Regulation, Plant; Light; Mutagenesis, Insertional; Phenotype; Plant Roots/drug effects/genetics/physiology/radiation effects; Plant Shoots/drug effects/genetics/physiology/radiation effects; Real-Time Polymerase Chain Reaction; Sodium Chloride/pharmacology; Stress, Physiological |
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Abstract |
The accumulation of anthocyanins in plants exposed to salt stress has been largely documented. However, the functional link and regulatory components underlying the biosynthesis of these molecules during exposure to stress are largely unknown. In a screen of second site suppressors of the salt overly sensitive3-1 (sos3-1) mutant, we isolated the anthocyanin-impaired-response-1 (air1) mutant. air1 is unable to accumulate anthocyanins under salt stress, a key phenotype of sos3-1 under high NaCl levels (120 mM). The air1 mutant showed a defect in anthocyanin production in response to salt stress but not to other stresses such as high light, low phosphorous, high temperature or drought stress. This specificity indicated that air1 mutation did not affect anthocyanin biosynthesis but rather its regulation in response to salt stress. Analysis of this mutant revealed a T-DNA insertion at the first exon of an Arabidopsis thaliana gene encoding for a basic region-leucine zipper transcription factor. air1 mutants displayed higher survival rates compared to wild-type in oxidative stress conditions, and presented an altered expression of anthocyanin biosynthetic genes such as F3H, F3’H and LDOX in salt stress conditions. The results presented here indicate that AIR1 is involved in the regulation of various steps of the flavonoid and anthocyanin accumulation pathways and is itself regulated by the salt-stress response signalling machinery. The discovery and characterization of AIR1 opens avenues to dissect the connections between abiotic stress and accumulation of antioxidants in the form of flavonoids and anthocyanins. |
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0167-4412 1573-5028 |
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CropM |
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MA @ admin @ |
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4616 |
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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
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4820 |
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Author |
Jayet, P.; Petsakos, A. |
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Title |
Evaluating the efficiency of a uniform N-input tax under different policy scenarios at different scales |
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Journal Article |
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Year |
2013 |
Publication |
Environmental Modelling & Assessment |
Abbreviated Journal |
Environmental Modelling & Assessment |
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18 |
Issue |
1 |
Pages |
57-72 |
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Keywords |
Bioeconomic model; Mathematical; programming; Nitrogen response curves; Nitrate emissions; Nitrogen tax |
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Nitrate pollution from agriculture is an important environmental externality, caused by the excessive use of fertilizers. The internalization of this problem, via a tax on mineral nitrogen, could lead to a second best solution, reducing nitrate emissions. Several authors suggest that a reduction in agricultural support could produce similar results. In this paper, we examine the effects of different levels of a uniformly implemented nitrogen tax in France under two policy scenarios, corresponding to post Agenda 2000 and 2003 Luxembourg reforms of European Union ’ s Common Agricultural Policy, in order to reveal the synergies and conflicts between the tax and the policy scenarios in terms of nitrate emissions abatement. The analysis is performed at different geographical scales, from the national to the regional and is based on a bioeconomic approach that involves the coupling of the economic model AROPAj with the crop model STICS. Results show that the efficiency of the N-tax varies according to the geographical scale of the analysis and the type of farming. Furthermore, we prove that a uniform implementation may lead to perverse effects that should always be taken into account when introducing second-best instruments. |
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TradeM, ftnotmacsur |
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MA @ admin @ |
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4605 |
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Author |
García-López, J.; Lorite, I.J.; García-Ruiz, R.; Domínguez, J. |
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Title |
Evaluation of three simulation approaches for assessing yield of rainfed sunflower in a Mediterranean environment for climate change impact modelling |
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Journal Article |
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Year |
2014 |
Publication |
Climatic Change |
Abbreviated Journal |
Clim. Change |
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124 |
Issue |
1-2 |
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147-162 |
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winter-wheat; water-stress; irrigation management; high-temperature; oil quality; oilcrop-sun; crop model; responses; variability; growth |
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The determination of the impact of climate change on crop yield at a regional scale requires the development of new modelling methodologies able to generate accurate yield estimates with reduced available data. In this study, different simulation approaches for assessing yield have been evaluated. In addition to two well-known models (AquaCrop and Stewart function), a methodological proposal considering a simplified approach using an empirical model (SOM) has been included in the analysis. This empirical model was calibrated using rainfed sunflower experimental field data from three sites located in Andalusia, southern Spain, and validated using two additional locations, providing very satisfactory results compared with the other models with higher data requirements. Thus, only requiring weather data (accumulated rainfall from the beginning of the season fixed on September 1st, and maximum temperature during flowering) the approach accurately described the temporal and spatial yield variability observed (RMSE = 391 kg ha(-1)). The satisfactory results for assessing yield of sunflower under semi-arid conditions obtained in this study demonstrate the utility of empirical approaches with few data requirements, providing an excellent decision tool for climate change impact analyses at a regional scale, where available data is very limited. |
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0165-0009 1573-1480 |
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CropM |
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MA @ admin @ |
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4622 |
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Author |
Holman, I.P.; Brown, C.; Carter, T.R.; Harrison, P.A.; Rounsevell, M. |
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Title |
Improving the representation of adaptation in climate change impact models |
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Journal Article |
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Year |
2019 |
Publication |
Regional Environmental Change |
Abbreviated Journal |
Reg. Environ. Change |
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Volume |
19 |
Issue |
3 |
Pages |
711-721 |
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Keywords |
Adaptive capacity; Limits; Water; Land; Decision making; Integrated assessment; Land-Cover Change; Global Change; River-Basin; Integrated Assessment; Adaptive Capacity; Vulnerability; Variability; Precautionary; Agriculture; Management |
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Climate change adaptation is a complex human process, framed by uncertainties and constraints, which is difficult to capture in existing assessment models. Attempts to improve model representations are hampered by a shortage of systematic descriptions of adaptation processes and their relevance to models. This paper reviews the scientific literature to investigate conceptualisations and models of climate change adaptation, and the ways in which representation of adaptation in models can be improved. The review shows that real-world adaptive responses can be differentiated along a number of dimensions including intent or purpose, timescale, spatial scale, beneficiaries and providers, type of action, and sector. However, models of climate change consequences for land use and water management currently provide poor coverage of these dimensions, instead modelling adaptation in an artificial and subjective manner. While different modelling approaches do capture distinct aspects of the adaptive process, they have done so in relative isolation, without producing improved unified representations. Furthermore, adaptation is often assumed to be objective, effective and consistent through time, with only a minority of models taking account of the human decisions underpinning the choice of adaptation measures (14%), the triggers that motivate actions (38%) or the time-lags and constraints that may limit their uptake and effectiveness (14%). No models included adaptation to take advantage of beneficial opportunities of climate change. Based on these insights, transferable recommendations are made on directions for future model development that may enhance realism within models, while also advancing our understanding of the processes and effectiveness of adaptation to a changing climate. |
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2019-04-27 |
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1436-3798 |
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TradeM, ft_macsur |
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MA @ admin @ |
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5220 |
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