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Author |
Sharif, B.; Makowski, D.; Plauborg, F.; Olesen, J.E. |
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Title |
Comparison of regression techniques to predict response of oilseed rape yield to variation in climatic conditions in Denmark |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume |
82 |
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Pages |
11-20 |
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Keywords |
Winter oilseed rape; Statistical models; Yield; Climate; Regression |
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Abstract |
Highlights • Regularization techniques for regression outperformed the classical regression techniques in predicting crop yields. • Different regression techniques with similar prediction accuracy showed different responses of major climatic variables to crop yield. • The regression models showed some responses of crop yield to climatic conditions that is mostly absent in process based crop models. Abstract Statistical regression models represent alternatives to process-based dynamic models for predicting the response of crop yields to variation in climatic conditions. Regression models can be used to quantify the effect of change in temperature and precipitation on yields. However, it is difficult to identify the most relevant input variables that should be included in regression models due to the high number of candidate variables and to their correlations. This paper compares several regression techniques for modeling response of winter oilseed rape yield to a high number of correlated input variables. Several statistical regression methods were fitted to a dataset including 689 observations of winter oilseed rape yield from replicated field experiments conducted in 239 sites in Denmark, covering nearly all regions of the country from 1992 to 2013. Regression methods were compared by cross-validation. The regression methods leading to the most accurate yield predictions were Lasso and Elastic Net, and the least accurate methods were ordinary least squares and stepwise regression. Partial least squares and ridge regression methods gave intermediate results. The estimated relative yield change for a +1°C temperature increase during flowering was estimated to range between 0 and +6 %, depending on choice of regression method. Precipitation was found to have an adverse effect on yield during autumn and winter. It was estimated that an increase in precipitation of +1 mm/day would result in a relative yield change ranging from 0 to −4 %. Soil type was also important for crop yields with lower yields on sandy soils compared to loamy soils. Later sowing was found to result in increased crop yield. The estimated effect of climate on yield was highly sensitive to the chosen regression method. Regression models showing similar performance led in some cases to different conclusions with respect to effect of temperature and precipitation. Hence, it is recommended to apply an ensemble of regression models, in order to account for the sensitivity of the data driven models for projecting crop yield under climate change. |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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4966 |
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Kersebaum, K.C.; Kollas, C.; Bindi, M.; Palosuo, T.; Wu, L.; Sharif, B.; Öztürk, I.; Trnka, M.; Hlavinka, P.; Nendel, C.; Müller, C.; Waha, K.; Armas-Herrera, C.; Olesen, J.E.; Eitzinger, J.; Roggero, P.P.; Conradt, T.; Martre, P.; Ferrise, R.; Moriondo, M.; Ruiz-Ramos, M.; Ventrella, D.; Rötter, R.P.; Wegehenkel, M.; Eckersten, H.; Lorite Torres, I.J.; Hernandez, C.G.; Launay, M.; De Wit, A.; Hoffmann, H.; Weigel, H.-J.; Manderscheid, R.; Beaudoin, N.; Constantin, J.; Garcia de Cortazar-Atauri, I.; Mary, B.; Ripoche, D.; Ruget, F. |
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Title |
Model inter-comparison on crop rotation effects – an intermediate report |
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Conference Article |
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Year |
2014 |
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Data of diverse crop rotations from five locations across Europe were distributed to modelers to investigate the capability of models to handle complex crop rotations and management interactions. Crop rotations comprise various main crops (winter/spring wheat, winter/spring barley, rye, oat, maize, sugar beet, oil seed rape and potatoes) plus several catch crops. The experimental setup of the datasets included treatments such as modified soils, crops exchanged within the rotations, irrigation/rainfed, nitrogen fertilization, residue management, tillage and atmospheric CO2 concentration. 19 modeling teams registered to model either the whole rotation or single crops. Models which are capable to run the whole rotation should provide transient as well as single year simulations with a reset of initial conditions. In the first step only initial soil conditions (water and soil mineral N) of the first year and key phenological stages were provided to the modelers. For calibration, crop yields and biomass were provided for selected years but not for all seasons. In total the combination of treatments and seasons results in 301 years of simulation. Results were analyzed to evaluate the effect of transient simulation versus single-year simulation regarding crop yield, biomass, water and nitrogen balance components. Model results will be evaluated crop-specifically to identify crops with highest uncertainty and potential for model improvement. Full data will be provided to modelers for model-improvement and results will provide insights into model capabilities to reproduce treatments and crops. Further, the question of error propagation along the transient simulation of crop rotations will be addressed. |
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FACCE MACSUR Mid-term Scientific Conference |
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3(S) Sassari, Italy |
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FACCE MACSUR Mid-term Scientific Conference, 2014-04-01 to 2014-04-04, Sassari, Italy |
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no |
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MA @ admin @ |
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5104 |
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Sharif, B.; Olesen, J.E.; Schelde, K. |
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Title |
Statistical learning approach for modelling the effects of climate change on oilseed rape yield |
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Conference Article |
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2014 |
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Statistical learning is a fairly new term referring to a set of supervised and unsupervised modelling and prediction techniques. It is based on traditional statistics but has been highly enhanced inspired by developments in machine learning and data mining. The main focus of statistical learning is to estimate the functions that quantify relations between several parameters and observed responses. These functions are further used for prediction, inference or a combination of both. For a particular case of quantitative responses, regularization techniques in regression are developed to overcome the weaknesses of ordinary least square (OLS) regression in prediction. These new shrinkage methods outperform OLS for prediction, especially in large datasets. In this study, a large dataset of field experiments on winter oilseed rape in Denmark for 22 years (1992 to 2013) was collected. Biweekly climatic data along with sowing date, harvest date, soil type and previous crop are considered as the explanatory variables. Yield of winter oilseed rape is considered as response variable. LASSO and Elastic Nets are the regularization techniques used to estimate the functions. Hold-one-out cross validation method for testing the prediction power reveals that these techniques are much useful in both prediction and inference. Since these techniques are included in recent versions of some software packages (e.g. R), they can be easily implemented by users at any level. The estimated function (model) is further used to predict the oilseed rape yield responses to climate change for several scenarios using representative weather data produced by a weather generator. |
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FACCE MACSUR Mid-term Scientific Conference |
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3(S) Sassari, Italy |
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FACCE MACSUR Mid-term Scientific Conference, 2014-04-01 to 2014-04-04, Sassari, Italy |
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no |
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MA @ admin @ |
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5129 |
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Sharif, B.; Mankowski, D.; Kersebaum, K.C.; Trnka, M.; Schelde, K.; Olsesen, J.E. |
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Title |
Empirical analysis on crop-weather relationships |
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Report |
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2015 |
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FACCE MACSUR Reports |
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6 |
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Pages |
D-C2.5 |
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There have been several studies, where process-based crop models are developed, used and compared in order to project crop production and corresponding model uncertainties under climate change. Despite many advances in this field, there are some correlations between climate variables and crop growth, such as pest and diseases, that is often absent in process-based models. Such relationships can be simulated using empirical models. In this study, several statistical techniques were applied on winter oilseed rape data collected in some European countries. The empirical models were then used to predict yield of winter oilseed rape in the field experiments during more than 20 years, up to 2013. Results suggest that newly developed regression techniques such as shrinkage methods work well both in yield projections and finding the influential climatic variables. Many of regression techniques agree in terms of yield prediction; however, choice of significant climate variables is rather sensitive to the choice of regression technique. No Label |
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MA @ admin @ |
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2092 |
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Author |
Sharif, B. |
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Title |
Inter-comparison of statistical models for projecting winter oilseed rape yield in Europe under climate change |
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2015 |
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FACCE MACSUR Reports |
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5 |
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Sp5-61 |
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While intercomparison of process-based crop models for projections under climate change is being intensively studied at European as well as at the global scale, little effort has been made for comparing statistical models. In this study, several regression techniques (ordinary least squares, stepwise, shrinkage methods, principle components and partial least squares) were combined with different types of climate input variables (with different temporal resolution) in order to define a large range of statistical models. Each model was fitted to winter oilseed rape data collected in 689, 325 and 173 field experiments carried out in Denmark, Germany, and Czech Republic, respectively. The fitted models were then used to predict yield of winter oilseed rape in the field experiments during more than 20 years, up to 2013. Interpretability of the estimated climate variable effects and accuracy of yield predictions were both analysed. Results suggest that recent statistical methods (e.g., shrinkage methods) may have considerable capabilities to complement traditional statistical methods in yield prediction. The selection of the most influential variables was strongly influenced by the statistical method used to analyse the data. Among the most recent statistical methods, the uncertainties in projecting yield of winter oilseed rape under climate change were mainly due to residual errors and uncertainty in estimated parameter values, and not to model choice. No Label |
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MACSUR Science Conference 2015 »Integrated Climate Risk Assessment in Agriculture & Food«, 8–9+10 April 2015, Reading, UK |
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MA @ admin @ |
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2176 |
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