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Stefańczyk, E., Sobkowiak, S., Brylińska, M., & Śliwka, J. (2016). Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland. Eur. J. Plant Pathol., .
Abstract: Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes.
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Siczek, A., Horn, R., Lipiec, J., Usowicz, B., & Łukowski, M. (2015). Effects of soil deformation and surface mulching on soil physical properties and soybean response related to weather conditions. Soil and Tillage Research, 153, 175–184.
Abstract: A field experiment was conducted on Haplic Luvisol developed from loess to assess the effects of soil deformation and straw mulch on soil water status (matric potential), temperature, penetration resistance, soybean growth, seed yield and yield components including straw, protein and oil in 2006-2008. Water use efficiencies related to the amount of rainfall during the growing seasons were calculated for seeds and total above ground biomass. The soil deformation levels (main plots) comprised the following trials: non-compacted (NC, 0 tractor pass), moderately compacted (MC, 3 passes), and strongly compacted (SC, 5 passes). A uniform seedbed in all plots was prepared by harrowing before planting. The main plots included sub-plots without and with surface wheat straw mulch (0.5 kg m(-2)) and the corresponding trials were NC + M, MC + M, SC + M. The amount and distribution of rainfall during the growing season differed among the experimental years with extended drought at bloom-full seed (R2-R6) stages in 2006, good water supply in 2007, and alternative periods with relatively high and low rainfalls in 2008. The effect of soil deformation on matric potential was influenced by weather conditions, soybean growth phase, mulching and depth. The differences were greatest in 2007 and 2008 at R7-R8 growth stages. With increasing deformation level from NC to SC matric potential for 0-15 cm depth during these stages significantly decreased from -401 to -1184 kPa in 2007 and from -1154 to -1432 kPa in 2008. On mulched soil, the corresponding ranges were from -541 to -841 klpa and from -748 to -1386 kPa, respectively. In the dry summer 2006, the differences were smaller and less consistent. Irrespective of soil deformation level, mulching reduced soil temperature in most growth phases but most pronounced initially. Most yield components increased from NC to MC during the experiments which could be attributed to enhanced root water and nutrient uptake rates and decreased from MC to SC due to high soil strength that restrained root growth down to deeper depth. The yields of seeds, straw, protein and oil as well as water productivity of soybean seed and biomass were improved by mulching in 2007-2008. This improvement was more pronounced in 2007 when the mean yield of seeds, protein and oil were significantly greater by 16, 29 and 11%, respectively and was attributed to positive alterations in soil water retention. These results indicate the possibilities of improvement in soybean performance by identifying allowable amount of traffic and mulching practices at planting depending on weather fluctuations during the growing season. Since rainfall and air temperature distribution in 2007 are close to those averaged over a long period of time, the use of straw mulch may positively affect soybean performance and yields excluding anomalously dry years. The positive effect of straw mulch can be enhanced by moderate soil deformation combined with seedbed loosening before planting to avoid constraining effect of soil structure on crop establishment. (C) 2015 Elsevier B.V. All rights reserved.
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Höglind, M., Thorsen, S. M., & Semenov, M. A. (2013). Assessing uncertainties in impact of climate change on grass production in Northern Europe using ensembles of global climate models. Agricultural and Forest Meteorology, 170, 103–113.
Abstract: Forage-based dairy and livestock production is the backbone of agriculture in Northern Europe in economic terms. Changes in growing conditions that affect forage grass yield may have great economic consequences. This study assessed the impact of climate change on two grass species, timothy and ryegrass, at 14 locations in Northern Europe (Iceland, Scandinavia, Baltic countries) in a near-future scenario (2040-2065) compared with the baseline period 1960-1990. Local-scale climate scenarios were based on the CMIP3 multi-model ensembles of 15 global climate models in order to quantify the uncertainty in the impacts relating to highly uncertain projections of future climate. Potential yield of timothy, the most important perennial forage grass in Northern Europe, was simulated under the assumption of optimal overwintering conditions and current CO2 level, in order to obtain an estimate of the effect of changes in summer climate per se. The risk of frost and ice damage during winter was also assessed. The simulation results demonstrated that potential grass yield will increase throughout the study area, mainly as a result of increased growing temperatures. The yield response to climate change was slightly larger in irrigated than non-irrigated conditions (14% and 11%, respectively), due to larger water deficit for the 2050 scenario. However, a geo-climatic gradient was evident, with the largest predicted yield response at western locations. A geo-climatic gradient was also revealed with respect to potential frost damage, which was predicted to increase during winter in some areas east of the Baltic Sea for timothy, and for a larger number of locations both east and west of the Baltic Sea for perennial ryegrass. The risk of frost damage in spring was predicted to increase mainly in western parts of the study area. If frost damage to perennial ryegrass increases during winter, the expected increase in winter temperature due to global warming may not necessarily improve overwintering conditions, so the growing zone may not necessarily expand to the north and east of the study area by 2050. The uncertainty in impacts was frequently, but not consistently, greater in western than eastern locations. (C) 2012 Elsevier B.V. All rights reserved.
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Caubel, J., García de Cortázar-Atauri, I., Launay, M., de Noblet-Ducoudré, N., Huard, F., Bertuzzi, P., et al. (2015). Broadening the scope for ecoclimatic indicators to assess crop climate suitability according to ecophysiological, technical and quality criteria. Agricultural and Forest Meteorology, 207, 94–106.
Abstract: The cultivation of crops in a given area is highly dependent of climatic conditions. Assessment of how the climate is favorable is highly useful for planners, land managers, farmers and plant breeders who can propose and apply adaptation strategies to improve agricultural potentialities. The aim of this study was to develop an assessment method for crop-climate suitability that was generic enough to be applied to a wide range of issues and crops. The method proposed is based on agroclimatic indicators that are calculated over phenological periods (ecoclimatic indicators). These indicators are highly relevant since they provide accurate information about the effect of climate on particular plant processes and cultural practices that take place during specific phenological periods. Three case studies were performed in order to illustrate the potentialities of the method. They concern annual (maize and wheat) and perennial (grape) crops and focus on the study of climate suitability in terms of the following criteria: ecophysiological, days available to carry out cultural practices, and harvest quality. The analysis of the results revealed both the advantages and limitations of the method. The method is general and flexible enough to be applied to a wide range of issues even if an expert assessment is initially needed to build the analysis framework. The limited number of input data makes it possible to use it to explore future possibilities for agriculture in many areas. The access to intermediate information through elementary ecoclimatic indicators allows users to propose targeted adaptations when climate suitability is not satisfactory.
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Conradt, T., Gornott, C., & Wechsung, F. (2016). Extending and improving regionalized winter wheat and silage maize yield regression models for Germany: Enhancing the predictive skill by panel definition through cluster analysis. Agricultural and Forest Meteorology, 216, 68–81.
Abstract: Regional agricultural yield assessments allowing for weather effect quantifications are a valuable basis for deriving scenarios of climate change effects and developing adaptation strategies. Assessing weather effects by statistical methods is a classical approach, but for obtaining robust results many details deserve attention and require individual decisions as is demonstrated in this paper. We evaluated regression models for annual yield changes of winter wheat and silage maize in more than 300 German counties and revised them to increase their predictive power. A major effort of this study was, however, aggregating separately estimated time series models (STSM) into panel data models (PDM) based on cluster analyses. The cluster analyses were based on the per-county estimates of STSM parameters. The original STSM formulations (adopted from a parallel study) contained also the non-meteorological input variables acreage and fertilizer price. The models were revised to use only weather variables as estimation basis. These consisted of time aggregates of radiation, precipitation, temperature, and potential evapotranspiration. Altering the input variables generally increased the predictive power of the models as did their clustering into PDM. For each crop, five alternative clusterings were produced by three different methods, and similarities between their spatial structures seem to confirm the existence of objective clusters about common model parameters. Observed smooth transitions of STSM parameter values in space suggest, however, spatial autocorrelation effects that could also be modeled explicitly. Both clustering and autocorrelation approaches can effectively reduce the noise in parameter estimation through targeted aggregation of input data. (C) 2015 Elsevier B.V. All rights reserved.
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