| Records |
| Author |
Meyer, P. |
| Title |
Epigenetic variation and environmental change |
Type  |
Journal Article |
| Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
| Volume |
66 |
Issue |
12 |
Pages |
3541-3548 |
| Keywords |
DNA Methylation/genetics; DNA Transposable Elements/genetics; *Environment; *Epigenesis, Genetic; Plants/genetics; Stress, Physiological/genetics; Adaptation; DNA methylation; epigenetics; stress response |
| Abstract |
Environmental conditions can change the activity of plant genes via epigenetic effects that alter the competence of genetic information to be expressed. This may provide a powerful strategy for plants to adapt to environmental change. However, as epigenetic changes do not modify DNA sequences and are therefore reversible, only those epi-mutations that are transmitted through the germline can be expected to contribute to a long-term adaptive response. The major challenge for the investigation of epigenetic adaptation theories is therefore to identify genomic loci that undergo epigenetic changes in response to environmental conditions, which alter their expression in a heritable way and which improve the plant’s ability to adapt to the inducing conditions. This review focuses on the role of DNA methylation as a prominent epigenetic mark that controls chromatin conformation, and on its potential in mediating expression changes in response to environmental signals. |
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English |
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| ISSN |
1460-2431 (Electronic) 0022-0957 (Linking) |
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Review |
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| Notes |
CropM |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4569 |
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| Author |
Lessire, F.; Hornick, J.L.; Minet, J.; Dufrasne, I. |
| Title |
Rumination time, milk yield, milking frequency of grazing dairy cows milked by a mobile automatic system during mild heat stress |
Type |
Journal Article |
| Year |
2015 |
Publication |
Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
| Volume |
6 |
Issue |
01 |
Pages |
12-14 |
| Keywords |
dairy; heat stress; THI; behaviour; milk yield |
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English |
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| ISSN |
2040-4700 |
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| Notes |
LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4570 |
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| Author |
Minet, J.; Laloy, E.; Tychon, B.; François, L. |
| Title |
Bayesian inversions of a dynamic vegetation model at four European grassland sites |
Type |
Journal Article |
| Year |
2015 |
Publication |
Biogeosciences |
Abbreviated Journal |
Biogeosciences |
| Volume |
12 |
Issue |
9 |
Pages |
2809-2829 |
| Keywords |
eddy-covariance data; terrestrial ecosystem model; bioclimatic affinity; groups; monte-carlo-simulation; dry-matter content; leaf-area; climate-change; stomatal conductance; parameter-estimation; plant |
| Abstract |
Eddy covariance data from four European grassland sites are used to probabilistically invert the CARAIB (CARbon Assimilation In the Biosphere) dynamic vegetation model (DVM) with 10 unknown parameters, using the DREAM((ZS)) (DiffeRential Evolution Adaptive Metropolis) Markov chain Monte Carlo (MCMC) sampler. We focus on comparing model inversions, considering both homoscedastic and heteroscedastic eddy covariance residual errors, with variances either fixed a priori or jointly inferred together with the model parameters. Agreements between measured and simulated data during calibration are comparable with previous studies, with root mean square errors (RMSEs) of simulated daily gross primary productivity (GPP), ecosystem respiration (RECO) and evapotranspiration (ET) ranging from 1.73 to 2.19, 1.04 to 1.56 g C m(-2) day(-1) and 0.50 to 1.28 mm day(-1), respectively. For the calibration period, using a homoscedastic eddy covariance residual error model resulted in a better agreement between measured and modelled data than using a heteroscedastic residual error model. However, a model validation experiment showed that CARAIB models calibrated considering heteroscedastic residual errors perform better. Posterior parameter distributions derived from using a heteroscedastic model of the residuals thus appear to be more robust. This is the case even though the classical linear heteroscedastic error model assumed herein did not fully remove heteroscedasticity of the GPP residuals. Despite the fact that the calibrated model is generally capable of fitting the data within measurement errors, systematic bias in the model simulations are observed. These are likely due to model inadequacies such as shortcomings in the photosynthesis modelling. Besides the residual error treatment, differences between model parameter posterior distributions among the four grassland sites are also investigated. It is shown that the marginal distributions of the specific leaf area and characteristic mortality time parameters can be explained by site-specific ecophysiological characteristics. |
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| ISSN |
1726-4189 |
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| Notes |
CropM LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4571 |
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| Author |
Montesino-San Martín, M.; Olesen, J.E.; Porter, J.R. |
| Title |
Can crop-climate models be accurate and precise? A case study for wheat production in Denmark |
Type |
Journal Article |
| Year |
2015 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
| Volume |
202 |
Issue |
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Pages |
51-60 |
| Keywords |
Uncertainty; Model intercomparison; Bayesian approach; Climate change; Wheat; Denmark; uncertainty analysis; simulation-models; bayesian-approach; change; impact; yields; variability; projections; scale; calibration; framework |
| Abstract |
Crop models, used to make projections of climate change impacts, differ greatly in structural detail. Complexity of model structure has generic effects on uncertainty and error propagation in climate change impact assessments. We applied Bayesian calibration to three distinctly different empirical and mechanistic wheat models to assess how differences in the extent of process understanding in models affects uncertainties in projected impact. Predictive power of the models was tested via both accuracy (bias) and precision (or tightness of grouping) of yield projections for extrapolated weather conditions. Yields predicted by the mechanistic model were generally more accurate than the empirical models for extrapolated conditions. This trend does not hold for all extrapolations; mechanistic and empirical models responded differently due to their sensitivities to distinct weather features. However, higher accuracy comes at the cost of precision of the mechanistic model to embrace all observations within given boundaries. The approaches showed complementarity in sensitivity to weather variables and in accuracy for different extrapolation domains. Their differences in model precision and accuracy make them suitable for generic model ensembles for near-term agricultural impact assessments of climate change. |
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English |
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Edition |
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| ISSN |
0168-1923 |
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| Notes |
CropM, ftnotmacsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4572 |
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| Author |
Kersebaum, K.C.; Boote, K.J.; Jorgenson, J.S.; Nendel, C.; Bindi, M.; Frühauf, C.; Gaiser, T.; Hoogenboom, G.; Kollas, C.; Olesen, J.E.; Rötter, R.P.; Ruget, F.; Thorburn, P.J.; Trnka, M.; Wegehenkel, M. |
| Title |
Analysis and classification of data sets for calibration and validation of agro-ecosystem models |
Type |
Journal Article |
| Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
| Volume |
72 |
Issue |
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Pages |
402-417 |
| Keywords |
field experiments; data quality; crop modelling; data requirement; minimum data; software; different climatic zones; soil-moisture sensors; spatial variability; nitrogen dynamics; crop models; systems simulation; wheat yields; elevated co2; growth; field |
| Abstract |
Experimental field data are used at different levels of complexity to calibrate, validate and improve agroecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regarding their suitability for different modelling purposes. Weighting of inputs and variables for testing was set from the aspect of crop modelling. The software allows users to adjust weights according to their specific requirements. Background information is given for the variables with respect to their relevance for modelling and possible uncertainties. Examples are given for data sets of the different classes. The framework helps to assemble high quality data bases, to select data from data bases according to modellers requirements and gives guidelines to experimentalists for experimental design and decide on the most effective measurements to improve the usefulness of their data for modelling, statistical analysis and data assimilation. (C) 2015 Elsevier Ltd. All rights reserved. |
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Edition |
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| ISSN |
1364-8152 |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4563 |
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