Records |
Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
Type |
Journal Article |
Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
Address |
2020-02-14 |
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Language |
English |
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ISSN |
0022-0957 |
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Notes |
LiveM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
5231 |
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Author |
Rötter, R.P.; Tao, F.; Höhn, J.G.; Palosuo, T. |
Title |
Use of crop simulation modelling to aid ideotype design of future cereal cultivars |
Type |
Journal Article |
Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
Volume |
66 |
Issue |
12 |
Pages |
3463-3476 |
Keywords |
Breeding/*methods; Climate Change; *Computer Simulation; Ecotype; Edible Grain/*growth & development; *Models, Theoretical; cereals; climate extremes; crop growth simulation; ensemble modelling; future cultivars; genetic modelling; ideotype breeding; model improvement; model-aided design |
Abstract |
A major challenge of the 21st century is to achieve food supply security under a changing climate and roughly a doubling in food demand by 2050 compared to present, the majority of which needs to be met by the cereals wheat, rice, maize, and barley. Future harvests are expected to be especially threatened through increased frequency and severity of extreme events, such as heat waves and drought, that pose particular challenges to plant breeders and crop scientists. Process-based crop models developed for simulating interactions between genotype, environment, and management are widely applied to assess impacts of environmental change on crop yield potentials, phenology, water use, etc. During the last decades, crop simulation has become important for supporting plant breeding, in particular in designing ideotypes, i.e. ‘model plants’, for different crops and cultivation environments. In this review we (i) examine the main limitations of crop simulation modelling for supporting ideotype breeding, (ii) describe developments in cultivar traits in response to climate variations, and (iii) present examples of how crop simulation has supported evaluation and design of cereal cultivars for future conditions. An early success story for rice demonstrates the potential of crop simulation modelling for ideotype breeding. Combining conventional crop simulation with new breeding methods and genetic modelling holds promise to accelerate delivery of future cereal cultivars for different environments. Robustness of model-aided ideotype design can further be enhanced through continued improvements of simulation models to better capture effects of extremes and the use of multi-model ensembles. |
Address |
2016-10-31 |
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Place of Publication |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Edition |
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ISSN |
0022-0957 1460-2431 |
ISBN |
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Medium |
Review |
Area |
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Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4804 |
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Author |
Cammarano, D.; Rötter, R.P.; Asseng, S.; Ewert, F.; Wallach, D.; Martre, P.; Hatfield, J.L.; Jones, J.W.; Rosenzweig, C.; Ruane, A.C.; Boote, K.J.; Thorburn, P.J.; Kersebaum, K.C.; Aggarwal, P.K.; Angulo, C.; Basso, B.; Bertuzzi, P.; Biernath, C.; Brisson, N.; Challinor, A.J.; Doltra, J.; Gayler, S.; Goldberg, R.; Heng, L.; Hooker, J.E.; Hunt, L.A.; Ingwersen, J.; Izaurralde, R.C.; Müller, C.; Kumar, S.N.; Nendel, C.; O’Leary, G.; Olesen, J.E.; Osborne, T.M.; Priesack, E.; Ripoche, D.; Steduto, P.; Stöckle, C.O.; Stratonovitch, P.; Streck, T.; Supit, I.; Tao, F.; Travasso, M.; Waha, K.; White, J.W.; Wolf, J. |
Title |
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2 |
Type |
Journal Article |
Year |
2016 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
Volume |
198 |
Issue |
|
Pages |
80-92 |
Keywords |
Multi-model simulation; Transpiration efficiency; Water use; Uncertainty; Sensitivity |
Abstract |
Projected global warming and population growth will reduce future water availability for agriculture. Thus, it is essential to increase the efficiency in using water to ensure crop productivity. Quantifying crop water use (WU; i.e. actual evapotranspiration) is a critical step towards this goal. Here, sixteen wheat simulation models were used to quantify sources of model uncertainty and to estimate the relative changes and variability between models for simulated WU, water use efficiency (WUE, WU per unit of grain dry mass produced), transpiration efficiency (Teff, transpiration per kg of unit of grain yield dry mass produced), grain yield, crop transpiration and soil evaporation at increased temperatures and elevated atmospheric carbon dioxide concentrations ([CO2]). The greatest uncertainty in simulating water use, potential evapotranspiration, crop transpiration and soil evaporation was due to differences in how crop transpiration was modelled and accounted for 50% of the total variability among models. The simulation results for the sensitivity to temperature indicated that crop WU will decline with increasing temperature due to reduced growing seasons. The uncertainties in simulated crop WU, and in particularly due to uncertainties in simulating crop transpiration, were greater under conditions of increased temperatures and with high temperatures in combination with elevated atmospheric [CO2] concentrations. Hence the simulation of crop WU, and in particularly crop transpiration under higher temperature, needs to be improved and evaluated with field measurements before models can be used to simulate climate change impacts on future crop water demand. |
Address |
2016-10-31 |
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English |
Summary Language |
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Series Editor |
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Series Issue |
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Edition |
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ISSN |
0378-4290 |
ISBN |
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Article |
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Conference |
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Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4786 |
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Author |
Sándor, R.; Ma, S.; Acutis, M.; Barcza, Z.; Ben Touhami, H.; Doro, L.; Hidy, D.; Köchy, M.; Lellei-Kovács, E.; Minet, J.; Perego, A.; Rolinski, S.; Ruget, F.; Seddaiu, G.; Wu, L.; Bellocchi, G. |
Title |
Uncertainty in simulating biomass yield and carbon–water fluxes from grasslands under climate change |
Type |
Journal Article |
Year |
2015 |
Publication |
Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
Volume |
6 |
Issue |
01 |
Pages |
49-51 |
Keywords |
grassland productivity; carbon balance; model simulation; uncertainty; sensitivity |
Abstract |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
2040-4700 |
ISBN |
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Medium |
Article |
Area |
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Expedition |
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Conference |
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Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4651 |
Permanent link to this record |
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Author |
Doro, L.; Jones, C.; Williams, J.R.; Norfleet, M.L.; Izaurralde, R.C.; Wang, X.; Jeong, J. |
Title |
The Variable Saturation Hydraulic Conductivity Method for Improving Soil Water Content Simulation in EPIC and APEX Models |
Type |
Journal Article |
Year |
2017 |
Publication |
Vadose Zone Journal |
Abbreviated Journal |
Vadose Zone Journal |
Volume |
16 |
Issue |
13 |
Pages |
|
Keywords |
Conservation Effects Assessment; Runoff Simulation; Unsaturated Soils; United-States; Porous-Media; Moisture; Flow; Productivity; Transport; Denitrification |
Abstract |
Soil water percolation is a key process in the life cycle of water in fields, watersheds, and river basins. The Environmental Policy Integrated Climate (EPIC) and the Agricultural Policy/Environmental eXtender (APEX) are continuous models developed for evaluating the environmental effects of agricultural management. Traditionally, these models have simulated soil water percolation processes using a tipping-bucket approach, with the rate of flow limited by the saturated hydraulic conductivity. This simple approach often leads to inaccuracy in simulating elevated soil water conditions where soil water content (SWC) levels may remain above field capacity under prolonged wet weather periods or limited drainage. To overcome this deficiency, a new sub-model, the variable saturation hydraulic conductivity (VSHC) method, was developed for simulating soil water percolation processes using a nonlinear equation to estimate the effective hydraulic conductivity as a function of the SWC and soil properties. The VSHC method was evaluated at three sites in the United States and two sites in Europe. In addition, a numerical solution of the Richards equation was used as a benchmark for SWC comparison. Results show that the VSHC method substantially improves the accuracy of the SWC simulation in long-term simulations, particularly during wet periods. At the watershed scale, results on the Riesel Y2 watershed indicate that the VSHC method enhances model performance in the high-flow regime of channel peak flows because of the improved estimation of SWC, which implies that the improved SWC simulation at the field scale is beneficial to hydrologic modeling at the watershed scale. |
Address |
2018-09-07 |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1539-1663 |
ISBN |
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Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
5208 |
Permanent link to this record |