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Quain, M. D., Makgopa, M. E., Marquez-Garcia, B., Comadira, G., Fernandez-Garcia, N., Olmos, E., et al. (2014). Ectopic phytocystatin expression leads to enhanced drought stress tolerance in soybean (Glycine max) and Arabidopsis thaliana through effects on strigolactone pathways and can also result in improved seed traits. Plant Biotechnol. J., 12(7), 903–913.
Abstract: Ectopic cystatin expression has long been used in plant pest management, but the cysteine protease, targets of these inhibitors, might also have important functions in the control of plant lifespan and stress tolerance that remain poorly characterized. We therefore characterized the effects of expression of the rice cystatin, oryzacystatin-I (OCI), on the growth, development and stress tolerance of crop (soybean) and model (Arabidopsis thaliana) plants. Ectopic OCI expression in soybean enhanced shoot branching and leaf chlorophyll accumulation at later stages of vegetative development and enhanced seed protein contents and decreased the abundance of mRNAs encoding strigolactone synthesis enzymes. The OCI-expressing A. thaliana showed a slow-growth phenotype, with increased leaf numbers and enhanced shoot branching at flowering. The OCI-dependent inhibition of cysteine proteases enhanced drought tolerance in soybean and A. thaliana, photosynthetic CO2 assimilation being much less sensitive to drought-induced inhibition in the OCI-expressing soybean lines. Ectopic OCI expression or treatment with the cysteine protease inhibitor E64 increased lateral root densities in A. thaliana. E64 treatment also increased lateral root densities in the max2-1 mutants that are defective in strigolactone signalling, but not in the max3-9 mutants that are defective in strigolactone synthesis. Taken together, these data provide evidence that OCI-inhibited cysteine proteases participate in the control of growth and stress tolerance through effects on strigolactones. We conclude that cysteine proteases are important targets for manipulation of plant growth, development and stress tolerance, and also seed quality traits.
Keywords: Arabidopsis/*genetics/metabolism/physiology; Carbon Dioxide/metabolism; Chlorophyll/metabolism; Cystatins/*genetics/metabolism/physiology; Droughts; Lactones/*metabolism; Oryza/genetics; Phenotype; Plant Proteins/*genetics/metabolism/physiology; Seeds/genetics/metabolism/physiology; Soybeans/*genetics/metabolism/physiology; Stress, Physiological/*genetics; cystatin; cysteine protease; drought tolerance; photosynthesis; seed protein and yield; strigolactone
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Legarrea, S., Betancourt, M., Plaza, M., Fraile, A., García-Arenal, F., & Fereres, A. (2012). Dynamics of nonpersistent aphid-borne viruses in lettuce crops covered with UV-absorbing nets. Virus Res., 165(1), 1–8.
Abstract: Aphid-transmitted viruses frequently cause severe epidemics in lettuce grown under Mediterranean climates. Spatio-temporal dynamics of aphid-transmitted viruses and its vector were studied on lettuce (Lactuca sativa L.) grown under tunnels covered by two types of nets: a commercial UV-absorbing net (Bionet) and a Standard net. A group of plants infected by Cucumber mosaic virus (CMV, family Bromoviridae, genus Cucumovirus) and Lettuce mosaic virus (LMV, family Potyviridae, genus Potyvirus) was transplanted in each plot. The same virus-infected source plants were artificially infested by the aphid Macrosiphum euphorbiae (Thomas). Secondary spread of insects was weekly monitored and plants were sampled for the detection of viruses every two weeks. In 2008, the infection rate of both CMV and LMV were lower under the Bionet than under the Standard cover, probably due to the lower population density and lower dispersal rate achieved by M. euphorbiae. However, during spring of 2009, significant differences in the rate of infection between the two covers were only found for LMV six weeks after transplant. The spatial distribution of the viruses analysed by SADIE methodology was “at random”, and it was not associated to the spatial pattern of the vector. The results obtained are discussed analyzing the wide range of interactions that occurred among UV-radiation, host plant, viruses, insect vector and environmental conditions. Our results show that UV-absorbing nets can be recommended as a component of an integrated disease management program to reduce secondary spread of lettuce viruses, although not as a control measure on its own.
Keywords: Absorption; Animals; Aphids/growth & development/radiation effects/*virology; Insect Control/instrumentation/*methods; Insect Vectors/growth & development/radiation effects/*virology; Lettuce/parasitology/*virology; Plant Diseases/prevention & control/*virology; Plant Viruses/*physiology; Protective Devices/virology; Ultraviolet Rays
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Ghaley, B. B., & Porter, J. R. (2014). Determination of biomass accumulation in mixed belts of Salix, Corylus and Alnus species in combined food and energy production system. Biomass and Bioenergy, 63, 86–91.
Abstract: Given the energetic, demographic and the climatic challenges faced today, we designed a combined food and energy (CFE) production system integrating food, fodder and mixed belts of Salix, Alnus and Corylus sp. as bioenergy belts. The objective was to assess the shoot dry weight-stem diameter allometric relationship based on stem diameter at 10 (SD10) and 55 cm (SD55) from the shoot base in the mixed bioenergy belts. Allometric relations based on SD10 and SD55 explained 90-96% and 90-98% of the variation in shoot dry weights respectively with no differences between the destructive and the non-destructive methods. The individual stool yields varied widely among the species and within willow species with biomass yield range of 37.60-92.00 oven dry tons (ODT) ha (1) in 4-year growth cycle. The biomass yield of the bioenergy belt, predicted by allometric relations was 48.84 ODT ha 1 in 4-year growth cycle corresponding to 12.21 ODT ha (1) year (1). The relatively high biomass yield is attributed to the border effects and the ‘fertilizing effect’ of alder due to nitrogen fixation, benefitting other SWRC components. On termination of 4-year growth cycle, the bioenergy belts were harvested and the biomass yield recorded was 12.54 ODT ha (1) year (1), in close proximity to the biomass yield predicted by the allometric equations, lending confidence and robustness of the model for biomass yield determination in such integrated agro-ecosystem. (C) 2014 Elsevier Ltd. All rights reserved.
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Kahiluoto, H., Kaseva, J., Hakala, K., Himanen, S. J., Jauhiainen, L., Rötter, R. P., et al. (2014). Cultivating resilience by empirically revealing response diversity. Glob. Environ. Change, 25, 186–193.
Abstract: Intensified climate and market turbulence requires resilience to a multitude of changes. Diversity reduces the sensitivity to disturbance and fosters the capacity to adapt to various future scenarios. What really matters is diversity of responses. Despite appeals to manage resilience, conceptual developments have not yet yielded a break-through in empirical applications. Here, we present an approach to empirically reveal the ‘response diversity’: the factors of change that are critical to a system are identified, and the response diversity is determined based on the documented component responses to these factors. We illustrate this approach and its added value using an example of securing food supply in the face of climate variability and change. This example demonstrates that quantifying response diversity allows for a new perspective: despite continued increase in cultivar diversity of barley, the diversity in responses to weather declined during the last decade in the regions where most of the barley is grown in Finland. This was due to greater homogeneity in responses among new cultivars than among older ones. Such a decline in the response diversity indicates increased vulnerability and reduced resilience. The assessment serves adaptive management in the face of both ecological and socioeconomic drivers. Supplier diversity in the food retail industry in order to secure affordable food in spite of global price volatility could represent another application. The approach is, indeed, applicable to any system for which it is possible to adopt empirical information regarding the response by its components to the critical factors of variability and change. Targeting diversification in response to critical change brings efficiency into diversity. We propose the generic procedure that is demonstrated in this study as a means to efficiently enhance resilience at multiple levels of agrifood systems and beyond. (C) 2014 The Authors. Published by Elsevier Ltd.
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Minet, J., Laloy, E., Tychon, B., & François, L. (2015). Bayesian inversions of a dynamic vegetation model at four European grassland sites. Biogeosciences, 12(9), 2809–2829.
Abstract: Eddy covariance data from four European grassland sites are used to probabilistically invert the CARAIB (CARbon Assimilation In the Biosphere) dynamic vegetation model (DVM) with 10 unknown parameters, using the DREAM((ZS)) (DiffeRential Evolution Adaptive Metropolis) Markov chain Monte Carlo (MCMC) sampler. We focus on comparing model inversions, considering both homoscedastic and heteroscedastic eddy covariance residual errors, with variances either fixed a priori or jointly inferred together with the model parameters. Agreements between measured and simulated data during calibration are comparable with previous studies, with root mean square errors (RMSEs) of simulated daily gross primary productivity (GPP), ecosystem respiration (RECO) and evapotranspiration (ET) ranging from 1.73 to 2.19, 1.04 to 1.56 g C m(-2) day(-1) and 0.50 to 1.28 mm day(-1), respectively. For the calibration period, using a homoscedastic eddy covariance residual error model resulted in a better agreement between measured and modelled data than using a heteroscedastic residual error model. However, a model validation experiment showed that CARAIB models calibrated considering heteroscedastic residual errors perform better. Posterior parameter distributions derived from using a heteroscedastic model of the residuals thus appear to be more robust. This is the case even though the classical linear heteroscedastic error model assumed herein did not fully remove heteroscedasticity of the GPP residuals. Despite the fact that the calibrated model is generally capable of fitting the data within measurement errors, systematic bias in the model simulations are observed. These are likely due to model inadequacies such as shortcomings in the photosynthesis modelling. Besides the residual error treatment, differences between model parameter posterior distributions among the four grassland sites are also investigated. It is shown that the marginal distributions of the specific leaf area and characteristic mortality time parameters can be explained by site-specific ecophysiological characteristics.
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