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Author |
Van Oijen, M.; Höglind, M. |
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Title  |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4820 |
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Author |
Zhang, S.; Tao, F.; Zhang, Z. |
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Title |
Uncertainty from model structure is larger than that from model parameters in simulating rice phenology in China |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume |
87 |
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Pages |
30-39 |
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Keywords |
Crop model, Extreme weather, Impacts, Rice development rate, Uncertainty; Climate-Change; Growth Duration; Crop Model; Ceres-Rice; Wheat; Temperature; Impact; Yield; Optimization; Performance |
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Abstract |
Rice models have been widely used in simulating and predicting rice phenology in contrasting climate zones, however the uncertainties from model structure (different equations or models) and/or model parameters were rarely investigated. Here, five rice phenological models/modules (Le., CERES-Rice, ORYZA2000, RCM, Beta Model and SIMRIW) were applied to simulate rice phenology at 23 experimental stations from 1992 to 2009 in two major rice cultivation regions of China: the northeastern China and the southwestern China. To investigate the uncertainties from model biophysical parameters, each model was run with randomly perturbed 50 sets of parameters. The results showed that the median of ensemble simulations were better than the simulation by most models. Models couldn’t simulate well in some specific years despite of parameters optimization, suggesting model structure limit model performance in some cases. The models adopting accumulative thermal time function (e.g., CERES-Rice and ORYZA2000) had better performance in the southwestern China, in contrast, those adopting exponential function (e.g., Beta model and RCM model) had better performance in the northeastern China. In northeastern China, the contribution of model structure and model parameters to model total variance was, respectively, about 55.90% and 44.10% in simulating heading date, and about 75.43% and 24.57% in simulating maturity date. In the southwestern China, the contribution of model structure and model parameters to model total variance was, respectively, about 79.97% and 27.03% in simulating heading date, about 92.15% and 7.85% in simulating maturity date. Uncertainty from model structure was the most relevant source. The results highlight that the temperature response functions of rice development rate under extreme climate conditions should be improved based on environment-controlled experimental data. |
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2017-08-07 |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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5170 |
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Author |
Daccache, A.; Ciurana, J.S.; Diaz, J.A.R.; Knox, J.W. |
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Title |
Water and energy footprint of irrigated agriculture in the Mediterranean region |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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9 |
Issue |
12 |
Pages |
124014 |
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Keywords |
food security; CO2 emissions; nexus; water productivity; water resources; climate-change; southern spain; management; impacts; deficit; grids |
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Abstract |
Irrigated agriculture constitutes the largest consumer of freshwater in the Mediterranean region and provides a major source of income and employment for rural livelihoods. However, increasing droughts and water scarcity have highlighted concerns regarding the environmental sustainability of agriculture in the region. An integrated assessment combining a gridded water balance model with a geodatabase and GIS has been developed and used to assess the water demand and energy footprint of irrigated production in the region. Modelled outputs were linked with crop yield and water resources data to estimate water (m(3) kg(-1)) and energy (CO2 kg(-1)) productivity and identify vulnerable areas or `hotspots’. For a selected key crops in the region, irrigation accounts for 61 km(3) yr(-1) of water abstraction and 1.78 Gt CO2 emissions yr-1, with most emissions from sunflower (73 kg CO2/t) and cotton (60 kg CO2/t) production. Wheat is a major strategic crop in the region and was estimated to have a water productivity of 1000 tMm(-3) and emissions of 31 kg CO2/t. Irrigation modernization would save around 8 km(3) of water but would correspondingly increase CO2 emissions by around +135\%. Shifting from rain-fed to irrigated production would increase irrigation demand to 166 km(3) yr(-1) (+137\%) whilst CO2 emissions would rise by +270\%. The study has major policy implications for understanding the water-energy-food nexus in the region and the trade-offs between strategies to save water, reduce CO2 emissions and/or intensify food production. |
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ISSN |
1748-9326 |
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CropM, ft_macsur |
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MA @ admin @ |
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4747 |
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Author |
Hlavinka, P.; Kersebaum, K.C.; Dubrovský, M.; Fischer, M.; Pohanková, E.; Balek, J.; Žalud, Z.; Trnka, M. |
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Title |
Water balance, drought stress and yields for rainfed field crop rotations under present and future conditions in the Czech Republic |
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Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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65 |
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175-192 |
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Keywords |
crop growth model; evapotranspiration; soil; climate change; climate-change scenarios; spring barley; wheat production; winter-wheat; model; impacts; europe; uncertainties; simulation; strategies |
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Abstract |
Continuous crop rotation modeling is a prospective trend that, compared to 1-crop or discrete year-by-year calculations, can provide more accurate results that are closer to real conditions. The goal of this study was to compare the water balance and yields estimated by the HERMES crop rotation model for present and future climatic conditions in the Czech Republic. Three locations were selected, representing important agricultural regions with different climatic conditions. Crop rotation (spring barley, silage maize, winter wheat, winter rape) was simulated from 1981-2080. The 1981-2010 period was covered by measured meteorological data, while 2011-2080 was represented by a transient synthetic weather series from the weather generator M& Rfi. The data were based on 5 circulation models, representing an ensemble of 18 CMIP3 global circulation models, to preserve much of the uncertainty of the original ensemble. Two types of crop management were compared, and the influences of soil quality, increasing atmospheric CO2 and adaptation measures (i. e. sowing date changes) were also considered. Results suggest that under a ‘dry’ scenario (such as GFCM21), C-3 crops in drier regions will be devastated for a significant number of seasons. Negative impacts are likely even on premium-quality soils regardless of flexible sowing dates and accounting for increasing CO2 concentrations. Moreover, in dry conditions, the use of crop rotations with catch crops may have negative impacts, exacerbating the soil water deficit for subsequent crops. This approach is a promising method for determining how various management strategies and crop rotations can affect yields as well as water, carbon and nitrogen cycling. |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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MA @ admin @ |
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4663 |
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Author |
Jägermeyr, J.; Gerten, D.; Heinke, J.; Schaphoff, S.; Kummu, M.; Lucht, W. |
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Title |
Water savings potentials of irrigation systems: global simulation of processes and linkages |
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Journal Article |
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Year |
2015 |
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Hydrology and Earth System Sciences |
Abbreviated Journal |
Hydrol. Earth System Sci. |
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19 |
Issue |
7 |
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3073-3091 |
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Keywords |
surface-water; vegetation model; climate-change; food demand; fresh-water; efficiency; productivity; groundwater; impacts; requirements |
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Abstract |
Global agricultural production is heavily sustained by irrigation, but irrigation system efficiencies are often surprisingly low. However, our knowledge of irrigation efficiencies is mostly confined to rough indicative estimates for countries or regions that do not account for spatiotemporal heterogeneity due to climate and other biophysical dependencies. To allow for refined estimates of global agricultural water use, and of water saving and water productivity potentials constrained by biophysical processes and also nontrivial downstream effects, we incorporated a process-based representation of the three major irrigation systems (surface, sprinkler, and drip) into a bio- and agrosphere model, LPJmL. Based on this enhanced model we provide a gridded world map of irrigation efficiencies that are calculated in direct linkage to differences in system types, crop types, climatic and hydrologic conditions, and overall crop management. We find pronounced regional patterns in beneficial irrigation efficiency (a refined irrigation efficiency indicator accounting for crop-productive water consumption only), due to differences in these features, with the lowest values (< 30 %) in south Asia and sub-Saharan Africa and the highest values (> 60 %) in Europe and North America. We arrive at an estimate of global irrigation water withdrawal of 2469 km(3) (2004-2009 average); irrigation water consumption is calculated to be 1257 km(3), of which 608 km(3) are non-beneficially consumed, i.e., lost through evaporation, interception, and conveyance. Replacing surface systems by sprinkler or drip systems could, on average across the world’s river basins, reduce the non-beneficial consumption at river basin level by 54 and 76 %, respectively, while maintaining the current level of crop yields. Accordingly, crop water productivity would increase by 9 and 15 %, respectively, and by much more in specific regions such as in the Indus basin. This study significantly advances the global quantification of irrigation systems while providing a framework for assessing potential future transitions in these systems. In this paper, presented opportunities associated with irrigation improvements are significant and suggest that they should be considered an important means on the way to sustainable food security. |
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2016-06-01 |
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1607-7938 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4739 |
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