Dumont, B., Leemans, V., Mansouri, M., Bodson, B., Destain, J. - P., & Destain, M. - F. (2014). Parameter identification of the STICS crop model, using an accelerated formal MCMC approach. Env. Model. Softw., 52, 121–135.
Abstract: This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved.
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Ma, S., Lardy, R., Graux, A. - I., Ben Touhami, H., Klumpp, K., Martin, R., et al. (2015). Regional-scale analysis of carbon and water cycles on managed grassland systems. Env. Model. Softw., 72, 356–371.
Abstract: Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system.
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Francone, C., Cassardo, C., Richiardone, R., & Confalonieri, R. (2012). Sensitivity Analysis and Investigation of the Behaviour of the UTOPIA Land-Surface Process Model: A Case Study for Vineyards in Northern Italy. Boundary-Layer Meteorology, 144(3), 419–430.
Abstract: We used sensitivity-analysis techniques to investigate the behaviour of the land-surface model UTOPIA while simulating the micrometeorology of a typical northern Italy vineyard (Vitis vinifera L.) under average climatic conditions. Sensitivity-analysis experiments were performed by sampling the vegetation parameter hyperspace using the Morris method and quantifying the parameter relevance across a wide range of soil conditions. This method was used since it proved its suitability for models with high computational time or with a large number of parameters, in a variety of studies performed on different types of biophysical models. The impact of input variability was estimated on reference model variables selected among energy (e.g. net radiation, sensible and latent heat fluxes) and hydrological (e.g. soilmoisture, surface runoff, drainage) budget components. Maximum vegetation cover and maximum leaf area index were ranked as the most relevant parameters, with sensitivity indices exceeding the remaining parameters by about one order of magnitude. Soil variability had a high impact on the relevance of most of the vegetation parameters: coefficients of variation calculated on the sensitivity indices estimated for the different soils often exceeded 100 %. The only exceptions were represented by maximum vegetation cover and maximum leaf area index, which showed a low variability in sensitivity indices while changing soil type, and confirmed their key role in affecting model results.
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Sándor, R., Ma, S., Acutis, M., Barcza, Z., Ben Touhami, H., Doro, L., et al. (2015). Uncertainty in simulating biomass yield and carbon–water fluxes from grasslands under climate change. Advances in Animal Biosciences, 6(01), 49–51.
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