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Semenov, M. A., Stratonovitch, P., Alghabari, F., & Gooding, M. J. (2014). Adapting wheat in Europe for climate change. J. Ceareal Sci., 59(3), 245–256.
Abstract: Increasing cereal yield is needed to meet the projected increased demand for world food supply of about 70% by 2050. Sirius, a process-based model for wheat, was used to estimate yield potential for wheat ideotypes optimized for future climatic projections for ten wheat growing areas of Europe. It was predicted that the detrimental effect of drought stress on yield would be decreased due to enhanced tailoring of phenology to future weather patterns, and due to genetic improvements in the response of photosynthesis and green leaf duration to water shortage. Yield advances could be made through extending maturation and thereby improve resource capture and partitioning. However the model predicted an increase in frequency of heat stress at meiosis and anthesis. Controlled environment experiments quantify the effects of heat and drought at booting and flowering on grain numbers and potential grain size. A current adaptation of wheat to areas of Europe with hotter and drier summers is a quicker maturation which helps to escape from excessive stress, but results in lower yields. To increase yield potential and to respond to climate change, increased tolerance to heat and drought stress should remain priorities for the genetic improvement of wheat.
Keywords: A, maximum area of flag leaf area; ABA, abscisic acid; CV, coefficient of variation; Crop improvement; Crop modelling; FC, field capacity; GMT, Greenwich mean time; GS, growth stage; Gf, grain filling duration; HI, harvest index; HSP, heat shock protein; Heat and drought tolerance; Impact assessment; LAI, leaf area index; Ph, phylochron; Pp, photoperiod response; Ru, root water uptake; S, duration of leaf senescence; SF, drought stress factor; Sirius; Wheat ideotype
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Minet, J., Laloy, E., Tychon, B., & François, L. (2015). Bayesian inversions of a dynamic vegetation model at four European grassland sites. Biogeosciences, 12(9), 2809–2829.
Abstract: Eddy covariance data from four European grassland sites are used to probabilistically invert the CARAIB (CARbon Assimilation In the Biosphere) dynamic vegetation model (DVM) with 10 unknown parameters, using the DREAM((ZS)) (DiffeRential Evolution Adaptive Metropolis) Markov chain Monte Carlo (MCMC) sampler. We focus on comparing model inversions, considering both homoscedastic and heteroscedastic eddy covariance residual errors, with variances either fixed a priori or jointly inferred together with the model parameters. Agreements between measured and simulated data during calibration are comparable with previous studies, with root mean square errors (RMSEs) of simulated daily gross primary productivity (GPP), ecosystem respiration (RECO) and evapotranspiration (ET) ranging from 1.73 to 2.19, 1.04 to 1.56 g C m(-2) day(-1) and 0.50 to 1.28 mm day(-1), respectively. For the calibration period, using a homoscedastic eddy covariance residual error model resulted in a better agreement between measured and modelled data than using a heteroscedastic residual error model. However, a model validation experiment showed that CARAIB models calibrated considering heteroscedastic residual errors perform better. Posterior parameter distributions derived from using a heteroscedastic model of the residuals thus appear to be more robust. This is the case even though the classical linear heteroscedastic error model assumed herein did not fully remove heteroscedasticity of the GPP residuals. Despite the fact that the calibrated model is generally capable of fitting the data within measurement errors, systematic bias in the model simulations are observed. These are likely due to model inadequacies such as shortcomings in the photosynthesis modelling. Besides the residual error treatment, differences between model parameter posterior distributions among the four grassland sites are also investigated. It is shown that the marginal distributions of the specific leaf area and characteristic mortality time parameters can be explained by site-specific ecophysiological characteristics.
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Mansouri, M., Dumont, B., Leemans, V., & Destain, M. - F. (2014). Bayesian methods for predicting LAI and soil water content. Precision Agric., 15(2), 184–201.
Abstract: LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation.
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De Pascale, S., Maggio, A., Orsini, F., Stanghellini, C., & Heuvelink, E. (2015). Growth response and radiation use efficiency in tomato exposed to short-term and long-term salinized soils. Scientia Horticulturae, 189, 139–149.
Abstract: Farmlands are increasingly exposed to degradation phenomena associated to climate change and agricultural practices, including irrigation. It is estimated that about 20% of the world’s irrigated land is salt affected. In this paper we aimed at evaluating the effect of seasonal and multiannual soil satinization on growth, yield, and radiation use efficiency of tomato in open field. Two field experiments were carried out at the Experimental Station of the University of Naples Federico II (latitude 40 degrees 31’N longitude 14 degrees 58’E) (Italy) on tomato during 2004 and 2005 to study the effect of five levels of water salinity: NSC (EC = 0.5 dS m(-1)), SW1 (EC= 2.3 dS m(-1)), SW2 (EC= 4.4 dS m(-1)), SW3 (EC= 8.5 dS m(-1)) and SW4 (EC= 15.7 dS m(-1)) in a soil exposed to one-season salinization (ST = short-term) and an adjacent soil exposed to >20 years salinization (LT = long-term). Plant growth, yield and fruit quality (pH, EC, total soluble solids and the concentration of reducing sugars and of titratable acids), and plant water relations were measured and radiation use efficiency (RUE) was calculated. Increasing water salinity negatively affected the leaf area index (LAI), radiation use efficiency (RUE) and above-ground dry weight (DW) accumulation resulting in lower total and marketable yield. Maximum total and marketable yield obtained with the NSC treatment were respectively 117.9 and 111.0 Mg ha(-1) in 2004 and 113.1 and 107.9 Mg ha(-1) in 2005. Although the smaller leaf area of salinized plants was largely responsible for reduced RUE, we found approximately 50% of this reduction to be accounted for by processes other than changed crop architecture. These may include an increased stomatal resistance, increased mesophyll resistance and other impaired metabolic functions that may occur at high salinity. Remarkably, we found that LT salinized plants had a slightly better efficiency of use of intercepted radiation (RUEIR) at a given EC of soil extract than ST salinized plants indicating that LT salinization, and consequent permanent modifications of the soil physical properties, may trigger additional physiological mechanisms of adaptation compared to ST salinized plants. These differences are relevant in light of the evolution of salinized areas, also in response to climate change.
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Lizaso, J. I., Ruiz-Rarnos, M., Rodriguez, L., Gabaldon-Leal, C., Oliveira, J. A., Lorite, I. J., et al. (2018). Impact of high temperatures in maize: Phenology and yield components. Field Crops Research, 216, 129–140.
Abstract: Heat stress is a main threat to current and future global maize production. Adaptation of maize to future warmer conditions requires improving our understanding of crop responses to elevated temperatures. For this purpose, the same short-season (FAO 300) maize hybrid PR37N01 was grown over three years of field experiments on three contrasting Spanish locations in terms of temperature regime. The information complemented three years of greenhouse experiments with the same hybrid, applying heat treatments at various critical moments of the crop cycle. Crop phenology, growth, grain yield, and yield components were monitored. An optimized beta function improved the calculation of thermal time compared to the linear-cutoff estimator with base and optimum temperatures of 8 and 34 degrees C, respectively. Our results showed that warmer temperatures accelerate development rate resulting in shorter vegetative and reproductive phases (ca. 30 days for the whole cycle). Heat stress did not cause silking delay in relation to anthesis (extended anthesis-silking interval), at least in the range of temperatures (maximum temperature up to 42.9 degrees C in the field and up to 52.5 degrees C in the greenhouse) considered in this study. Our results indicated that maize grain yield is reduced under heat stress mainly via pollen viability that in turn determines kernel number, although a smaller but significant effect of the female component has been also detected.
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