| Records |
| Author |
Van Oijen, M.; Höglind, M. |
Title  |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
| Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
| Volume |
207 |
Issue |
3 |
Pages |
627-643 |
| Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
| Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
| Address |
2016-10-31 |
| Corporate Author |
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Thesis |
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| Publisher |
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Place of Publication |
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Editor |
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| Language |
English |
Summary Language |
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Original Title |
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| Series Editor |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0014-2336 |
ISBN |
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Medium |
Article |
| Area |
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Expedition |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4820 |
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| Author |
Mäkinen, H.; Kaseva, J.; Trnka, M.; Balek, J.; Kersebaum, K.C.; Nendel, C.; Gobin, A.; Olesen, J.E.; Bindi, M.; Ferrise, R.; Moriondo, M.; Rodriguez, A.; Ruiz-Ramos, M.; Takáč, J.; Bezák, P.; Ventrella, D.; Ruget, F.; Capellades, G.; Kahiluoto, H. |
| Title |
Sensitivity of European wheat to extreme weather |
Type |
Journal Article |
| Year |
2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
| Volume |
222 |
Issue |
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Pages |
209-217 |
| Keywords |
European wheat; Cultivar; Weather; Extreme; Climate change; Yield response; High-Temperature; Heat-Stress; Use Efficiency; Growth-Stages; Winter-Wheat; Yield; Crop; Barley; Tolerance |
| Abstract |
The frequency and intensity of extreme weather is increasing concomitant with changes in the global climate change. Although wheat is the most important food crop in Europe, there is currently no comprehensive empirical information available regarding the sensitivity of European wheat to extreme weather. In this study, we assessed the sensitivity of European wheat yields to extreme weather related to phenology (sowing, heading) in cultivar trials across Europe (latitudes 37.21 degrees to 61.34 degrees and longitudes- 6.02 degrees to 26.24 degrees) during the period 1991-2014. All the observed agro-climatic extremes (>= 31 degrees C, >= 35 degrees C, or drought around heading; >= 35 degrees C from heading to maturity; excessive rainfall; heavy rainfall and low global radiation) led to marked yield penalties in a selected set of European cultivars, whereas few cultivars were found to with no yield penalty in such conditions. There were no European wheat cultivars that responded positively (+ 10%) to drought after sowing, or frost during winter (- 15 degrees C and – 20 degrees C). Positive responses to extremes were often shown by cultivars associated with specific regions, such as good performance under high temperatures by southern-origin cultivars. Consequently, a major future breeding challenge will be to evaluate the potential of combining such cultivar properties with other properties required under different growing conditions with, for example, long day conditions at higher latitudes, when the intensity and frequency of extremes rapidly increase. |
| Address |
2018-06-05 |
| Corporate Author |
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Thesis |
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Place of Publication |
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Editor |
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| Language |
English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0378-4290 |
ISBN |
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Medium |
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| Area |
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Expedition |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5200 |
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| Author |
Hakala, K.; Jauhiainen, L.; Himanen, S.J.; RÖTter, R.; Salo, T.; Kahiluoto, H. |
| Title |
Sensitivity of barley varieties to weather in Finland |
Type |
Journal Article |
| Year |
2012 |
Publication |
Journal of Agricultural Science |
Abbreviated Journal |
J. Agric. Sci. |
| Volume |
150 |
Issue |
02 |
Pages |
145-160 |
| Keywords |
climate-change; winter-wheat; spring wheat; reproductive growth; high-temperatures; changing climate; crop production; increased CO2; yield; tolerance |
| Abstract |
Global climate change is predicted to shift seasonal temperature and precipitation patterns. An increasing frequency of extreme weather events such as heat waves and prolonged droughts is predicted, but there are high levels of uncertainty about the nature of local changes. Crop adaptation will be important in reducing potential damage to agriculture. Crop diversity may enhance resilience to climate variability and changes that are difficult to predict. Therefore, there has to be sufficient diversity within the set of available cultivars in response to weather parameters critical for yield formation. To determine the scale of such ‘weather response diversity’ within barley (Hordeum vulgare L.), an important crop in northern conditions, the yield responses of a wide range of modern and historical varieties were analysed according to a well-defined set of critical agro-meteorological variables. The Finnish long-term dataset of MTT Official Variety Trials was used together with historical weather records of the Finnish Meteorological Institute. The foci of the analysis were firstly to describe the general response of barley to different weather conditions and secondly to reveal the diversity among varieties in the sensitivity to each weather variable. It was established that barley yields were frequently reduced by drought or excessive rain early in the season, by high temperatures at around heading, and by accelerated temperature sum accumulation rates during periods 2 weeks before heading and between heading and yellow ripeness. Low temperatures early in the season increased yields, but frost during the first 4 weeks after sowing had no effect. After canopy establishment, higher precipitation on average resulted in higher yields. In a cultivar-specific analysis, it was found that there were differences in responses to all but three of the studied climatic variables: waterlogging and drought early in the season and temperature sum accumulation rate before heading. The results suggest that low temperatures early in the season, delayed sowing, rain 3-7 weeks after sowing, a temperature change 3-4 weeks after sowing, a high temperature sum accumulation rate from heading to yellow ripeness and high temperatures (25 degrees C) at around heading could mostly be addressed by exploiting the traits found in the range of varieties included in the present study. However, new technology and novel genetic material are needed to enable crops to withstand periods of excessive rain or drought early in the season and to enhance performance under increased temperature sum accumulation rates prior to heading. |
| Address |
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| Language |
English |
Summary Language |
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Original Title |
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Series Issue |
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Edition |
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| ISSN |
0021-8596 1469-5146 |
ISBN |
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Article |
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Expedition |
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Conference |
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| Notes |
CropM |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4586 |
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| Author |
De Pascale, S.; Orsini, F.; Caputo, R.; Palermo, M.A.; Barbieri, G.; Maggio, A. |
| Title |
Seasonal and multiannual effects of salinisation on tomato yield and fruit quality |
Type |
Journal Article |
| Year |
2012 |
Publication |
Functional Plant Biology |
Abbreviated Journal |
Functional Plant Biology |
| Volume |
39 |
Issue |
8 |
Pages |
689-698 |
| Keywords |
fruit ions concentration; fruit lipophilic and hydrophilic antioxidant; capacities; leaf water potentials; leaf stomatal conductance; short- and; long-term salinisation; salinity tolerance; water-stress; antioxidant activity; irrigation; growth; plants; soils; carotenoids; responses; crops |
| Abstract |
The effects of short-and long-term salinisation were studied by comparing tomato growth on a soil exposed to one-season salinisation (short term) vs growth on a soil exposed to >20 years salinisation (long term). Remarkable differences were associated to substantial modifications of the soil physical-chemical characteristics in the root zone, including deteriorated structure, reduced infiltration properties and increased pH. Fresh yield, fruit number and fruit weight were similarly affected by short-and long-term salinisation. In contrast, the marketable yield was significantly lower in the long-term salinised soil-a response that was also associated to nutritional imbalance (mainly referred to P and K). As reported for plants growing under oxygen deprivation stress, the antioxidant capacity of the water soluble fraction of salinised tomato fruits was enhanced by short-term salinisation, also. Overall, long-term salinisation may cause physiological imbalances and yield reductions that cannot be solely attributed to hyperosmotic stress and ionic toxicity. Therefore, the ability of plants to cope with nutritional deficiency and withstand high pH and anoxia may be important traits that should be considered to improve plant tolerance to long-term salinised soils. |
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Thesis |
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Place of Publication |
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Editor |
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| Language |
English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
1445-4408 |
ISBN |
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Article |
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Expedition |
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Conference |
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| Notes |
CropM |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4583 |
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| Author |
Höglind, M.; Van Oijen, M.; Cameron, D.; Persson, T. |
| Title |
Process-based simulation of growth and overwintering of grassland using the BASGRA model |
Type |
Journal Article |
| Year |
2016 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
| Volume |
335 |
Issue |
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Pages |
1-15 |
| Keywords |
Cold hardening; Frost injury; Phleum pratense L.; Process-based; modelling; Winter survival; Yield; low-temperature tolerance; perennial forage crops; dry-matter; production; climate-change; nutritive-value; snow-cover; bayesian; calibration; timothy regrowth; phleum-pratense; lolium-perenne |
| Abstract |
Process-based models (PBM) for simulation of weather dependent grass growth can assist farmers and plant breeders in addressing the challenges of climate change by simulating alternative roads of adaptation. They can also provide management decision support under current conditions. A drawback of existing grass models is that they do not take into account the effect of winter stresses, limiting their use for full-year simulations in areas where winter survival is a key factor for yield security. Here, we present a novel full-year PBM for grassland named BASGRA. It was developed by combining the LINGRA grassland model (Van Oijen et al., 2005a) with models for cold hardening and soil physical winter processes. We present the model and show how it was parameterized for timothy (Phleum pratense L.), the most important forage grass in Scandinavia and parts of North America and Asia. Uniquely, BASGRA simulates the processes taking place in the sward during the transition from summer to winter, including growth cessation and gradual cold hardening, and functions for simulating plant injury due to low temperatures, snow and ice affecting regrowth in spring. For the calibration, we used detailed data from five different locations in Norway, covering a wide range of agroclimatic regions, day lengths (latitudes from 59 degrees to 70 degrees N) and soil conditions. The total dataset included 11 variables, notably above-ground dry matter, leaf area index, tiller density, content of C reserves, and frost tolerance. All data were used in the calibration. When BASGRA was run with the maximum a-posteriori (MAP) parameter vector from the single, Bayesian calibration, nearly all measured variables were simulated to an overall normalized root mean squared error (NRMSE) <0.5. For many site x experiment combinations, NRMSE was <0.3. The temporal dynamics were captured well for most variables, as evaluated by comparing simulated time courses versus data for the individual sites. The results may suggest that BASGRA is a reasonably robust model, allowing for simulation of growth and several important underlying processes with acceptable accuracy for a range of agroclimatic conditions. However, the robustness of the model needs to be tested further using independent data from a wide range of growing conditions. Finally we show an example of application of the model, comparing overwintering risks in two climatically different sites, and discuss future model applications. Further development work should include improved simulation of the dynamics of C reserves, and validation of winter tiller dynamics against independent data. (C) 2016 Elsevier B.V. All rights reserved. |
| Address |
2016-07-28 |
| Corporate Author |
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Thesis |
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Place of Publication |
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Editor |
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| Language |
English |
Summary Language |
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Original Title |
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| Series Editor |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0304-3800 |
ISBN |
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Medium |
Article |
| Area |
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Expedition |
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Conference |
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| Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4764 |
| Permanent link to this record |
