Brylińska, M., Sobkowiak, S., Stefańczyk, E., & Śliwka, J. (2016). Potato cultivation system affects population structure of Phytophthora infestans. Fungal Ecology, 20, 132–143.
Abstract: Phytophthora infestans is one of the most destructive potato pathogens. Many factors influence the population structure of P. infestans, including migration, climate and type of potato cultivation. Here, we analyse 365 P. infestans isolates collected from three regions of Poland over three years. We determined mating type, mitochondrial haplotype, resistance to metalaxyl, virulence and polymorphism at 14 simple sequence repeat (SSR) loci. Analysis of SSR markers showed high genetic diversity associated with this population. Model-based structure analysis grouped 299 unique genotypes into four main clusters. The P. infestans isolates collected from the Mlochow region, which has the most intensive level of potato cultivation, formed a distinct cluster, indicating a strong effect of the cultivation system on pathogen population structure. Three clusters contained isolates with frequent presence of three alleles at one locus, which may affect their capacity for sexual reproduction and preserve groups of fit genotypes that propagate asexually. (C) 2016 Elsevier Ltd and The British Mycological Society.
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Kipling, R., Scollan, N., Bannink, A., & van Middelkoop, J. (2016). From diversity to strategy: Livestock research for effective policy in a climate change world (Vol. 8).
Abstract: European livestock agriculture is extraordinarily diverse, and so are the challenges it faces. This diversity has contributed to the development of a fragmented set of research communities. As a result, livestock research is often under-represented at policy level, despite its high relevance for the environment and food security. Understanding livestock systems and how they can sustainably adapt to global change requires inputs across research areas, including grasslands, nutrition, health, welfare and ecology. It also requires experimental researchers, modellers and stakeholders to work closely together. Networks and capacity building structures are vital to enable livestock research to meet the challenges of climate change. They need to maintain shared resources and provide non-competitive arenas to share and synthesize results for policy support. ï‚· Long term strategic investment is needed to support such structures. Their leadership requires very different skills to those effective in scientific project coordination.
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Semenov, M. A., & Stratonovitch, P. (2016). Local-scale CMIP5-based climate scenarios for MACSUR2 (Vol. 8).
Abstract: Climate sensitivity of GCMs was used to select 5 GCMs from the CMIP5 ensemble for impact studies in MACSUR2. Selected GCMs for MACSUR2 are EC-EARTH (7), GFDL-CM3 (8) HadGEM2-ES (10), MIROC5 (13), and MPI-ESM-MR (15). These GCMs are evenly distributed among CMIP5 (Fig 1) and should capture, in principal, climate uncertainty of the CMIP5 ensemble. Using 5 GCMs will enable us to assess uncertainties in impacts related to uncertainty in climate projections. The selection of GCMs in MACSUR2 has a good overlap with selections of GCMs used in CORDEX and AgMIP projects. We used the LARS-WG generator to construct local-scale CMIP5-based climate scenarios for Europe (Semenov & Stratonovitch, 2015). Fifteen sites were selected in Europe for MACSUR2. For each site and each selected GCM, 100 yrs climate daily data were generated by LARS-WG for RCP4.5 and RCP8.5 emission scenarios and for baseline and 3 future periods: near-term (2021-2040), mid-term (2041-2060) and long-term (2081-2100).
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Wallach, D., Thorburn, P., Asseng, S., Challinor, A. J., Ewert, F., Jones, J. W., et al. (2016). Overview paper on comprehensive framework for assessment of error and uncertainty in crop model predictions (Vol. 8).
Abstract: Crop models are important tools for impact assessment of climate change, as well as for exploring management options under current climate. It is essential to evaluate the uncertainty associated with predictions of these models. Several ways of quantifying prediction uncertainty have been explored in the literature, but there have been no studies of how the different approaches are related to one another, and how they are related to some overall measure of prediction uncertainty. Here we show that all the different approaches can be related to two different viewpoints about the model; either the model is treated as a fixed predictor with some average error, or the model can be treated as a random variable with uncertainty in one or more of model structure, model inputs and model parameters. We discuss the differences, and show how mean squared error of prediction can be estimated in both cases. The results can be used to put uncertainty estimates into a more general framework and to relate different uncertainty estimates to one another and to overall prediction uncertainty. This should lead to a better understanding of crop model prediction uncertainty and the underlying causes of that uncertainty. This study was published as (Wallach et al. 2016)
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Liu, X., Lehtonen, H., Purola, T., Pavlova, Y., Rötter, R., & Palosuo, T. (2016). Dynamic economic modelling of crop rotations with farm management practices under future pest pressure. Agricultural Systems, 144, 65–76.
Abstract: Agricultural practice is facing multiple challenges under volatile commodity markets, inevitable climate change, mounting pest pressure and various other environment-related constraints. The objective of this research is to present a dynamic optimization model of crop rotations and farm management and show its suitability for economic analysis over a 30 year time period. In this model, we include management practices such as fertilization, fungicide treatment and liming, and apply it in a region in Southwestern Finland. Results show that (i) growing pest pressure favours the cultivation of wheat-oats and wheat-oilseeds combinations, while (ii) market prices largely determine the crops in the rotation plan and the specific management practices adopted. The flexibility of our model can also be utilized in evaluating the value of other management options such as new cultivars under different projections of future climate and market conditions.
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