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Wallach, D., Thorburn, P., Asseng, S., Challinor, A. J., Ewert, F., Jones, J. W., et al. (2016). Overview paper on comprehensive framework for assessment of error and uncertainty in crop model predictions (Vol. 8).
Abstract: Crop models are important tools for impact assessment of climate change, as well as for exploring management options under current climate. It is essential to evaluate the uncertainty associated with predictions of these models. Several ways of quantifying prediction uncertainty have been explored in the literature, but there have been no studies of how the different approaches are related to one another, and how they are related to some overall measure of prediction uncertainty. Here we show that all the different approaches can be related to two different viewpoints about the model; either the model is treated as a fixed predictor with some average error, or the model can be treated as a random variable with uncertainty in one or more of model structure, model inputs and model parameters. We discuss the differences, and show how mean squared error of prediction can be estimated in both cases. The results can be used to put uncertainty estimates into a more general framework and to relate different uncertainty estimates to one another and to overall prediction uncertainty. This should lead to a better understanding of crop model prediction uncertainty and the underlying causes of that uncertainty. This study was published as (Wallach et al. 2016)
Keywords: MACSUR_ACK; CropM
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Makowski, D., Asseng, S., Ewert, F., Bassu, S., Durand, J. L., Li, T., et al. (2015). A statistical analysis of three ensembles of crop model responses to temperature and CO2 concentration. Agricultural and Forest Meteorology, 214-215, 483–493.
Abstract: Ensembles of process-based crop models are increasingly used to simulate crop growth for scenarios of temperature and/or precipitation changes corresponding to different projections of atmospheric CO2 concentrations. This approach generates large datasets with thousands of simulated crop yield data. Such datasets potentially provide new information but it is difficult to summarize them in a useful way due to their structural complexities. An associated issue is that it is not straightforward to compare crops and to interpolate the results to alternative climate scenarios not initially included in the simulation protocols. Here we demonstrate that statistical models based on random-coefficient regressions are able to emulate ensembles of process-based crop models. An important advantage of the proposed statistical models is that they can interpolate between temperature levels and between CO2 concentration levels, and can thus be used to calculate temperature and [CO2] thresholds leading to yield loss or yield gain, without rerunning the original complex crop models. Our approach is illustrated with three yield datasets simulated by 19 maize models, 26 wheat models, and 13 rice models. Several statistical models are fitted to these datasets, and are then used to analyze the variability of the yield response to [CO2] and temperature. Based on our results, we show that, for wheat, a [CO2] increase is likely to outweigh the negative effect of a temperature increase of +2 degrees C in the considered sites. Compared to wheat, required levels of [CO2] increase are much higher for maize, and intermediate for rice. For all crops, uncertainties in simulating climate change impacts increase more with temperature than with elevated [CO2].
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Challinor, A. J., Smith, M. S., & Thornton, P. (2013). Use of agro-climate ensembles for quantifying uncertainty and informing adaptation. Agricultural and Forest Meteorology, 170, 2–7.
Abstract: ► Introduces the special issue on Agricultural prediction using climate model ensembles. ► Discuss remaining scientific challenges. ► Develops distinction between projection- and utility-based ensemble modelling. ► Recommendations made RE modelling and the analysis and reporting of uncertainty. Significant progress has been made in the use of ensemble agricultural and climate modelling, and observed data, to project future productivity and to develop adaptation options. An increasing number of agricultural models are designed specifically for use with climate ensembles, and improved methods to quantify uncertainty in both climate and agriculture have been developed. Whilst crop–climate relationships are still the most common agricultural study of this sort, on-farm management, hydrology, pests, diseases and livestock are now also examined. This paper introduces all of these areas of progress, with more detail being found in the subsequent papers in the special issue. Remaining scientific challenges are discussed, and a distinction is developed between projection- and utility-based approaches to agro-climate ensemble modelling. Recommendations are made regarding the manner in which uncertainty is analysed and reported, and the way in which models and data are used to make inferences regarding the future. A key underlying principle is the use of models as tools from which information is extracted, rather than as competing attempts to represent reality.
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Martre, P., Wallach, D., Asseng, S., Ewert, F., Jones, J. W., Rötter, R. P., et al. (2015). Multimodel ensembles of wheat growth: many models are better than one. Glob. Chang. Biol., 21(2), 911–925.
Abstract: Crop models of crop growth are increasingly used to quantify the impact of global changes due to climate or crop management. Therefore, accuracy of simulation results is a major concern. Studies with ensembles of crop models can give valuable information about model accuracy and uncertainty, but such studies are difficult to organize and have only recently begun. We report on the largest ensemble study to date, of 27 wheat models tested in four contrasting locations for their accuracy in simulating multiple crop growth and yield variables. The relative error averaged over models was 24-38% for the different end-of-season variables including grain yield (GY) and grain protein concentration (GPC). There was little relation between error of a model for GY or GPC and error for in-season variables. Thus, most models did not arrive at accurate simulations of GY and GPC by accurately simulating preceding growth dynamics. Ensemble simulations, taking either the mean (e-mean) or median (e-median) of simulated values, gave better estimates than any individual model when all variables were considered. Compared to individual models, e-median ranked first in simulating measured GY and third in GPC. The error of e-mean and e-median declined with an increasing number of ensemble members, with little decrease beyond 10 models. We conclude that multimodel ensembles can be used to create new estimators with improved accuracy and consistency in simulating growth dynamics. We argue that these results are applicable to other crop species, and hypothesize that they apply more generally to ecological system models.
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Ramirez-Villegas, J., Watson, J., & Challinor, A. J. (2015). Identifying traits for genotypic adaptation using crop models. J. Experim. Bot., 66(12), 3451–3462.
Abstract: Genotypic adaptation involves the incorporation of novel traits in crop varieties so as to enhance food productivity and stability and is expected to be one of the most important adaptation strategies to future climate change. Simulation modelling can provide the basis for evaluating the biophysical potential of crop traits for genotypic adaptation. This review focuses on the use of models for assessing the potential benefits of genotypic adaptation as a response strategy to projected climate change impacts. Some key crop responses to the environment, as well as the role of models and model ensembles for assessing impacts and adaptation, are first reviewed. Next, the review describes crop-climate models can help focus the development of future-adapted crop germplasm in breeding programmes. While recently published modelling studies have demonstrated the potential of genotypic adaptation strategies and ideotype design, it is argued that, for model-based studies of genotypic adaptation to be used in crop breeding, it is critical that modelled traits are better grounded in genetic and physiological knowledge. To this aim, two main goals need to be pursued in future studies: (i) a better understanding of plant processes that limit productivity under future climate change; and (ii) a coupling between genetic and crop growth models-perhaps at the expense of the number of traits analysed. Importantly, the latter may imply additional complexity (and likely uncertainty) in crop modelling studies. Hence, appropriately constraining processes and parameters in models and a shift from simply quantifying uncertainty to actually quantifying robustness towards modelling choices are two key aspects that need to be included into future crop model-based analyses of genotypic adaptation.
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