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Sharif, B., Mankowski, D., Kersebaum, K. C., Trnka, M., Schelde, K., & Olsesen, J. E. (2015). Empirical analysis on crop-weather relationships (Vol. 6).
Abstract: There have been several studies, where process-based crop models are developed, used and compared in order to project crop production and corresponding model uncertainties under climate change. Despite many advances in this field, there are some correlations between climate variables and crop growth, such as pest and diseases, that is often absent in process-based models. Such relationships can be simulated using empirical models. In this study, several statistical techniques were applied on winter oilseed rape data collected in some European countries. The empirical models were then used to predict yield of winter oilseed rape in the field experiments during more than 20 years, up to 2013. Results suggest that newly developed regression techniques such as shrinkage methods work well both in yield projections and finding the influential climatic variables. Many of regression techniques agree in terms of yield prediction; however, choice of significant climate variables is rather sensitive to the choice of regression technique. No Label
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Kersebaum, K. C., Kollas, C., Bindi, M., Palosuo, T., Wu, L., Sharif, B., et al. (2014). Model inter-comparison on crop rotation effects – an intermediate report. FACCE MACSUR Mid-term Scientific Conference, 3(S) Sassari, Italy.
Abstract: Data of diverse crop rotations from five locations across Europe were distributed to modelers to investigate the capability of models to handle complex crop rotations and management interactions. Crop rotations comprise various main crops (winter/spring wheat, winter/spring barley, rye, oat, maize, sugar beet, oil seed rape and potatoes) plus several catch crops. The experimental setup of the datasets included treatments such as modified soils, crops exchanged within the rotations, irrigation/rainfed, nitrogen fertilization, residue management, tillage and atmospheric CO2 concentration. 19 modeling teams registered to model either the whole rotation or single crops. Models which are capable to run the whole rotation should provide transient as well as single year simulations with a reset of initial conditions. In the first step only initial soil conditions (water and soil mineral N) of the first year and key phenological stages were provided to the modelers. For calibration, crop yields and biomass were provided for selected years but not for all seasons. In total the combination of treatments and seasons results in 301 years of simulation. Results were analyzed to evaluate the effect of transient simulation versus single-year simulation regarding crop yield, biomass, water and nitrogen balance components. Model results will be evaluated crop-specifically to identify crops with highest uncertainty and potential for model improvement. Full data will be provided to modelers for model-improvement and results will provide insights into model capabilities to reproduce treatments and crops. Further, the question of error propagation along the transient simulation of crop rotations will be addressed.
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Sharif, B., Olesen, J. E., & Schelde, K. (2014). Statistical learning approach for modelling the effects of climate change on oilseed rape yield. FACCE MACSUR Mid-term Scientific Conference, 3(S) Sassari, Italy.
Abstract: Statistical learning is a fairly new term referring to a set of supervised and unsupervised modelling and prediction techniques. It is based on traditional statistics but has been highly enhanced inspired by developments in machine learning and data mining. The main focus of statistical learning is to estimate the functions that quantify relations between several parameters and observed responses. These functions are further used for prediction, inference or a combination of both. For a particular case of quantitative responses, regularization techniques in regression are developed to overcome the weaknesses of ordinary least square (OLS) regression in prediction. These new shrinkage methods outperform OLS for prediction, especially in large datasets. In this study, a large dataset of field experiments on winter oilseed rape in Denmark for 22 years (1992 to 2013) was collected. Biweekly climatic data along with sowing date, harvest date, soil type and previous crop are considered as the explanatory variables. Yield of winter oilseed rape is considered as response variable. LASSO and Elastic Nets are the regularization techniques used to estimate the functions. Hold-one-out cross validation method for testing the prediction power reveals that these techniques are much useful in both prediction and inference. Since these techniques are included in recent versions of some software packages (e.g. R), they can be easily implemented by users at any level. The estimated function (model) is further used to predict the oilseed rape yield responses to climate change for several scenarios using representative weather data produced by a weather generator.
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Yin, X., Kersebaum, K. - C., Beaudoin, N., Constantin, J., Chen, F., Louarn, G., et al. (2020). Uncertainties in simulating N uptake, net N mineralization, soil mineral N and N leaching in European crop rotations using process-based models. Field Crops Research, , 107863.
Abstract: Modelling N transformations within cropping systems is crucial for N management optimization in order to increase N use efficiency and reduce N losses. Such modelling remains challenging because of the complexity of N cycling in soil–plant systems. In the current study, the uncertainties of six widely used process-based models (PBMs), including APSIM, CROPSYST, DAISY, FASSET, HERMES and STICS, were tested in simulating different N managements (catch crops (CC) and different N fertilizer rates) in 12-year rotations in Western Europe. Winter wheat, sugar beet and pea were the main crops, and radish was the main CC in the tested systems. Our results showed that PBMs simulated yield, aboveground biomass, N export and N uptake well with low RMSE values, except for sugar beet, which was generally less well parameterized. Moreover, PBMs provided more accurate crop simulations (i.e. N export and N uptake) compared to simulations of soil (N mineralization and soil mineral N (SMN)) and environmental variables (N leaching). The use of multi-model ensemble mean or median of four PBMs significantly reduced the mean absolute percentage error (MAPE) between simulations and observations to less than 15% for yield, aboveground biomass, N export and N uptake. Multi-model ensemble also significantly reduced the MAPE for net N mineralization and annual N leaching to around 15%, while it was larger than 20% for SMN. Generally, PBMs well simulated the CC effects on N fluxes, i.e. increasing N mineralization and reducing N leaching in both short-term and long-term, and all PBMs correctly predicted the effects of the reduced N rate on all measured variables in the study. The uncertainties of multi-model ensemble for N mineralization, SMN and N leaching were larger, mainly because these variables are influenced by plant-soil interactions and subject to cumulative long-term effects in crop rotations, which makes them more difficult to simulate. Large differences existed between individual PBMs due to the differences in formalisms for describing N processes in soil–plant systems, the skills of modelers and the model calibration level. In addition, the model performance also depended on the simulated variables, for instance, HERMES and FASSET performed better for yield and crop biomass, APSIM, DAISY and STICS performed better for N export and N uptake, STICS provided best simulation for SMN and N leaching among the six individual PBMs in the study, but all PBMs met difficulties to well predict either average or variance of soil N mineralization. Our results showed that better calibration for soil N variables is needed to improve model predictions of N cycling in order to optimize N management in crop rotations.
Keywords: multi-model ensemble; crop rotations; catch crops; N cycling; N export
Area: CropM
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Kollas, C., Kersebaum, K. C., Nendel, C., Manevski, K., Müller, C., Palosuo, T., et al. (2015). Crop rotation modelling—A European model intercomparison. European Journal of Agronomy, 70, 98–111.
Abstract: • First model inter-comparison on crop rotations. • Continuous simulation of multi-year crop rotations yields outperformed single-year simulation. • Low accuracy of yield predictions in less commonly modelled crops such as potato, radish, grass vegetation. • Multi-model mean prediction was found to minimise the likely error arising from single-model predictions. • The representation of intermediate crops and carry-over effects in the models require further research efforts.
Diversification of crop rotations is considered an option to increase the resilience of European crop production under climate change. So far, however, many crop simulation studies have focused on predicting single crops in separate one-year simulations. Here, we compared the capability of fifteen crop growth simulation models to predict yields in crop rotations at five sites across Europe under minimal calibration. Crop rotations encompassed 301 seasons of ten crop types common to European agriculture and a diverse set of treatments (irrigation, fertilisation, CO2 concentration, soil types, tillage, residues, intermediate or catch crops). We found that the continuous simulation of multi-year crop rotations yielded results of slightly higher quality compared to the simulation of single years and single crops. Intermediate crops (oilseed radish and grass vegetation) were simulated less accurately than main crops (cereals). The majority of models performed better for the treatments of increased CO2 and nitrogen fertilisation than for irrigation and soil-related treatments. The yield simulation of the multi-model ensemble reduced the error compared to single-model simulations. The low degree of superiority of continuous simulations over single year simulation was caused by (a) insufficiently parameterised crops, which affect the performance of the following crop, and (b) the lack of growth-limiting water and/or nitrogen in the crop rotations under investigation. In order to achieve a sound representation of crop rotations, further research is required to synthesise existing knowledge of the physiology of intermediate crops and of carry-over effects from the preceding to the following crop, and to implement/improve the modelling of processes that condition these effects. |