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Author |
Martre, P.; He, J.; Le Gouis, J.; Semenov, M.A. |
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Title |
In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management |
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Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3581-3598 |
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Keywords |
Climate; *Computer Simulation; Crops, Agricultural/*growth & development/physiology; Edible Grain/*growth & development; Models, Biological; Nitrogen/metabolism; Plant Proteins/*metabolism; Plant Transpiration; Probability; *Quantitative Trait, Heritable; Soil/chemistry; Triticum/growth & development/metabolism/*physiology; Water/chemistry; Crop growth model; genetic adaptation; grain protein concentration; grain yield; interannual variability; sensitivity analysis; wheat (Triticum aestivum L.); yield stability |
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Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work. |
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1460-2431 (Electronic) 0022-0957 (Linking) |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4567 |
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Kunert, K.J.; van Wyk, S.G.; Cullis, C.A.; Vorster, B.J.; Foyer, C.H. |
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Title |
Potential use of phytocystatins in crop improvement, with a particular focus on legumes |
Type |
Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3559-3570 |
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Keywords |
Crops, Agricultural/*growth & development/metabolism; Cystatins/*metabolism; Cysteine Proteases/metabolism; Fabaceae/*growth & development/metabolism; Plant Proteins/*metabolism; Plant Root Nodulation; Stress, Physiological; Chilling; cystatin; drought; protein degradation; senescence; soybean; stress tolerance |
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Abstract |
Phytocystatins are a well-characterized class of naturally occurring protease inhibitors that function by preventing the catalysis of papain-like cysteine proteases. The action of cystatins in biotic stress resistance has been studied intensively, but relatively little is known about their functions in plant growth and defence responses to abiotic stresses, such as drought. Extreme weather events, such as drought and flooding, will have negative impacts on the yields of crop plants, particularly grain legumes. The concepts that changes in cellular protein content and composition are required for acclimation to different abiotic stresses, and that these adjustments are achieved through regulation of proteolysis, are widely accepted. However, the nature and regulation of the protein turnover machinery that underpins essential stress-induced cellular restructuring remain poorly characterized. Cysteine proteases are intrinsic to the genetic programmes that underpin plant development and senescence, but their functions in stress-induced senescence are not well defined. Transgenic plants including soybean that have been engineered to constitutively express phytocystatins show enhanced tolerance to a range of different abiotic stresses including drought, suggesting that manipulation of cysteine protease activities by altered phytocystatin expression in crop plants might be used to improve resilience and quality in the face of climate change. |
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0022-0957 1460-2431 |
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CropM |
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MA @ admin @ |
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4564 |
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Kersebaum, K.C.; Boote, K.J.; Jorgenson, J.S.; Nendel, C.; Bindi, M.; Frühauf, C.; Gaiser, T.; Hoogenboom, G.; Kollas, C.; Olesen, J.E.; Rötter, R.P.; Ruget, F.; Thorburn, P.J.; Trnka, M.; Wegehenkel, M. |
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Title |
Analysis and classification of data sets for calibration and validation of agro-ecosystem models |
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Journal Article |
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2015 |
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Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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72 |
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402-417 |
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field experiments; data quality; crop modelling; data requirement; minimum data; software; different climatic zones; soil-moisture sensors; spatial variability; nitrogen dynamics; crop models; systems simulation; wheat yields; elevated co2; growth; field |
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Experimental field data are used at different levels of complexity to calibrate, validate and improve agroecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regarding their suitability for different modelling purposes. Weighting of inputs and variables for testing was set from the aspect of crop modelling. The software allows users to adjust weights according to their specific requirements. Background information is given for the variables with respect to their relevance for modelling and possible uncertainties. Examples are given for data sets of the different classes. The framework helps to assemble high quality data bases, to select data from data bases according to modellers requirements and gives guidelines to experimentalists for experimental design and decide on the most effective measurements to improve the usefulness of their data for modelling, statistical analysis and data assimilation. (C) 2015 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM, ft_macsur |
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MA @ admin @ |
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4563 |
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Elliott, J.; Müller, C.; Deryng, D.; Chryssanthacopoulos, J.; Boote, K.J.; Büchner, M.; Foster, I.; Glotter, M.; Heinke, J.; Iizumi, T.; Izaurralde, R.C.; Mueller, N.D.; Ray, D.K.; Rosenzweig, C.; Ruane, A.C.; Sheffield, J. |
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Title |
The Global Gridded Crop Model Intercomparison: data and modeling protocols for Phase 1 (v1.0) |
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Journal Article |
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Year |
2015 |
Publication |
Geoscientific Model Development |
Abbreviated Journal |
Geosci. Model Dev. |
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8 |
Issue |
2 |
Pages |
261-277 |
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Keywords |
land-surface model; climate-change; systems simulation; high-resolution; water; carbon; yield; agriculture; patterns; growth |
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We present protocols and input data for Phase 1 of the Global Gridded Crop Model Intercomparison, a project of the Agricultural Model Intercomparison and Improvement Project (AgMIP). The project includes global simulations of yields, phenologies, and many land-surface fluxes using 12-15 modeling groups for many crops, climate forcing data sets, and scenarios over the historical period from 1948 to 2012. The primary outcomes of the project include (1) a detailed comparison of the major differences and similarities among global models commonly used for large-scale climate impact assessment, (2) an evaluation of model and ensemble hindcasting skill, (3) quantification of key uncertainties from climate input data, model choice, and other sources, and (4) a multi-model analysis of the agricultural impacts of large-scale climate extremes from the historical record. |
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1991-9603 |
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CropM, ft_macsur |
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MA @ admin @ |
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4559 |
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Author |
Dockter, C.; Hansson, M. |
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Title |
Improving barley culm robustness for secured crop yield in a changing climate |
Type |
Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3499-3509 |
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Keywords |
Climate Change; Crops, Agricultural/*anatomy & histology/genetics/*growth & development; Edible Grain/anatomy & histology/genetics/growth & development; Genes, Plant; Hordeum/*anatomy & histology/genetics/*growth & development; Phenotype; Barley (Hordeum vulgare); Green Revolution; brassinosteroid; gibberellin; lodging; plant architecture; short culm |
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The Green Revolution combined advancements in breeding and agricultural practice, and provided food security to millions of people. Daily food supply is still a major issue in many parts of the world and is further challenged by future climate change. Fortunately, life science research is currently making huge progress, and the development of future crop plants will be explored. Today, plant breeding typically follows one gene per trait. However, new scientific achievements have revealed that many of these traits depend on different genes and complex interactions of proteins reacting to various external stimuli. These findings open up new possibilities for breeding where variations in several genes can be combined to enhance productivity and quality. In this review we present an overview of genes determining plant architecture in barley, with a special focus on culm length. Many genes are currently known only through their mutant phenotypes, but emerging genomic sequence information will accelerate their identification. More than 1000 different short-culm barley mutants have been isolated and classified in different phenotypic groups according to culm length and additional pleiotropic characters. Some mutants have been connected to deficiencies in biosynthesis and reception of brassinosteroids and gibberellic acids. Still other mutants are unlikely to be connected to these hormones. The genes and corresponding mutations are of potential interest for development of stiff-straw crop plants tolerant to lodging, which occurs in extreme weather conditions with strong winds and heavy precipitation. |
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ISSN |
0022-0957 1460-2431 |
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CropM |
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MA @ admin @ |
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4556 |
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