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Ramirez-Villegas, J., Watson, J., & Challinor, A. J. (2015). Identifying traits for genotypic adaptation using crop models. J. Experim. Bot., 66(12), 3451–3462.
Abstract: Genotypic adaptation involves the incorporation of novel traits in crop varieties so as to enhance food productivity and stability and is expected to be one of the most important adaptation strategies to future climate change. Simulation modelling can provide the basis for evaluating the biophysical potential of crop traits for genotypic adaptation. This review focuses on the use of models for assessing the potential benefits of genotypic adaptation as a response strategy to projected climate change impacts. Some key crop responses to the environment, as well as the role of models and model ensembles for assessing impacts and adaptation, are first reviewed. Next, the review describes crop-climate models can help focus the development of future-adapted crop germplasm in breeding programmes. While recently published modelling studies have demonstrated the potential of genotypic adaptation strategies and ideotype design, it is argued that, for model-based studies of genotypic adaptation to be used in crop breeding, it is critical that modelled traits are better grounded in genetic and physiological knowledge. To this aim, two main goals need to be pursued in future studies: (i) a better understanding of plant processes that limit productivity under future climate change; and (ii) a coupling between genetic and crop growth models-perhaps at the expense of the number of traits analysed. Importantly, the latter may imply additional complexity (and likely uncertainty) in crop modelling studies. Hence, appropriately constraining processes and parameters in models and a shift from simply quantifying uncertainty to actually quantifying robustness towards modelling choices are two key aspects that need to be included into future crop model-based analyses of genotypic adaptation.
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Persson, T., Höglind, M., Gustavsson, A. - M., Halling, M., Jauhiainen, L., Niemeläinen, O., et al. (2014). Evaluation of the LINGRA timothy model under Nordic conditions. Field Crops Research, 161, 87–97.
Abstract: Simulation models are frequently applied to determine the production potential of forage grasses under various scenarios, including climate change. Thorough calibrations and evaluations of forage grass models can help improve their applicability. This study evaluated the ability of the Light Interception and Utilization Simulator-GRAss (LINGRA) model to predict biomass yield of timothy (Phleum pratense L. cv. Grindstad) in the Nordic countries. Variety trial data for the first and second year after establishment were obtained for seven locations: Jokioinen, Finland (60 degrees 48 ‘ N; 23 degrees 29 ‘ E), Maaninka, Finland (63 degrees 09 ‘ N; 27 degrees 18 ‘ E), Korpa, Iceland (64 degrees 09 ‘ N; 21 degrees 45 ‘ W), Srheim, Norway (58 degrees 41 ‘ N; 5 degrees 39 ‘ E), Lillerud, Sweden (59 degrees 24’ N; 13 degrees 16 ‘ E), Ostersund, Sweden (63 degrees 15 ‘ N; 14 degrees 34 ‘ E) and Ulna Sweden (63 degrees 49 ‘ N; 20 degrees 13 ‘ E) from 1992 to 2012. Two calibrations of the LINGRA model were carried out using Bayesian techniques. In the first of these (SRrheim calibration), data on biomass yield and underlying variables obtained from independent field trials at Srheim were used. In the second (Nordic calibration), biomass data from the other locations were used as well. The model was validated against the remaining set of biomass yields from all locations not included in the Nordic calibration. The observed total seasonal yield the first and second year after establishment was 913 and 991 g DM m(-2) respectively on average across the locations. The corresponding average simulated yield after the Srheim calibration was 1044 (root mean square error (RMSE) 258) and 1112 g DM m(-2) (RMSE 312), respectively. After the Nordic calibration, the simulated average total seasonal yield was 863 (RMSE 242) the first year and 927 g DM m(-2) (RMSE 271) the second year after establishment. The differences between the observed and simulated first cut yield followed the same patterns, whereas the prediction accuracy for second cut yield did not differ substantially between the calibration approaches.Using the parameter set from the Nordic region decreased the model predictability at Srheim compared with only using model parameters derived from this location. These results show that using biomass data from several locations, instead of only one specific location, in the calibration of the LINGRA model improved the overall prediction accuracy of first cut dry matter yield and total seasonal dry matter yield across an environmentally heterogeneous region. To further analyse the usefulness of including multi-site data in forage grass model calibrations, other forage grass models could be evaluated against the same dataset.
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Perego, A., Sanna, M., Giussani, A., Chiodini, M. E., Fumagalli, M., Pilu, S. R., et al. (2014). Designing a high-yielding maize ideotype for a changing climate in Lombardy plain northern Italy. Science of the Total Environment, 499, 497–509.
Abstract: • ARMOSA model simulated a maize ideotype with drought adaptation under climate change. • The ideotype needs less water for higher yield compared to current hybrids. • Higher production involves more crop residues that enhance soil C sequestration. • Soil organic C may generally decrease and N leaching will increase in sandy soil. The expected climate change will affect the maize yields in view of air temperature increase and scarce water availability. The application of biophysical models offers the chance to design a drought-resistant ideotype and to assist plant breeders and agronomists in the assessment of its suitability in future scenarios. The aim of the present work was to perform a model-based estimation of the yields of two hybrids, current vs ideotype, under future climate scenarios (2030–2060 and 2070–2100) in Lombardy (northern Italy), testing two options of irrigation (small amount at fixed dates vs optimal water supply), nitrogen (N) fertilization (300 vs 400 kg N ha− 1), and crop cycle durations (current vs extended). For the designing of the ideotype we set several parameters of the ARMOSA process-based crop model: the root elongation rate and maximum depth, stomatal resistance, four stage-specific crop coefficients for the actual transpiration estimation, and drought tolerance factor. The work findings indicated that the current hybrid ensures good production only with high irrigation amount (245–565 mm y− 1). With respect to the current hybrid, the ideotype will require less irrigation water (− 13%, p < 0.01) and it resulted in significantly higher yield under water stress condition (+ 15%, p < 0.01) and optimal water supply (+ 2%, p < 0.05). The elongated cycle has a positive effect on yield under any combination of options. Moreover, higher yields projected for the ideotype implicate more crop residues to be incorporated into the soil, which are positively correlated with the SOC sequestration and negatively with N leaching. The crop N uptake is expected to be adequate in view of higher rate of soil mineralization; the N fertilization rate of 400 kg N ha− 1 will involve significant increasing of grain yield, and it is expected to involve a higher rate of SOC sequestration.
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Mansouri, M., Dumont, B., Leemans, V., & Destain, M. - F. (2014). Bayesian methods for predicting LAI and soil water content. Precision Agric., 15(2), 184–201.
Abstract: LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation.
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García-López, J., Lorite, I. J., García-Ruiz, R., & Domínguez, J. (2014). Evaluation of three simulation approaches for assessing yield of rainfed sunflower in a Mediterranean environment for climate change impact modelling. Clim. Change, 124(1-2), 147–162.
Abstract: The determination of the impact of climate change on crop yield at a regional scale requires the development of new modelling methodologies able to generate accurate yield estimates with reduced available data. In this study, different simulation approaches for assessing yield have been evaluated. In addition to two well-known models (AquaCrop and Stewart function), a methodological proposal considering a simplified approach using an empirical model (SOM) has been included in the analysis. This empirical model was calibrated using rainfed sunflower experimental field data from three sites located in Andalusia, southern Spain, and validated using two additional locations, providing very satisfactory results compared with the other models with higher data requirements. Thus, only requiring weather data (accumulated rainfall from the beginning of the season fixed on September 1st, and maximum temperature during flowering) the approach accurately described the temporal and spatial yield variability observed (RMSE = 391 kg ha(-1)). The satisfactory results for assessing yield of sunflower under semi-arid conditions obtained in this study demonstrate the utility of empirical approaches with few data requirements, providing an excellent decision tool for climate change impact analyses at a regional scale, where available data is very limited.
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