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Schauberger, B., Rolinski, S., & Müller, C. (2016). A network-based approach for semi-quantitative knowledge mining and its application to yield variability. Environ. Res. Lett., 11(12), 123001.
Abstract: Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields.
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Ventrella, D., Charfeddine, M., Giglio, L., & Castellini, M. (2012). Application of DSSAT models for an agronomic adaptation strategy under climate change in Southern of Italy: optimum sowing and transplanting time for winter durum wheat and tomato. Ital. J. Agron., 7(1), 16.
Abstract: Many climate change studies have been carried out in different parts of the world to assess climate change vulnerability and adaptation capacity of agricultural crops for certain environments characterized from climatic, pedological and agronomical point of view. The objective of this study was to analyse the productive response of winter durum wheat and tomato to climate change and sowing/transplanting time in one of the most productive areas of Italy (i.e. Capitanata, Puglia), using CERES-Wheat and CROPGRO cropping system models. Three climatic datasets were used: i) a single dataset (50 km x 50 km) provided by the JRC European centre for the period 1975- 2005; two datasets from HadCM3 for the IPCC A2 GHG scenario for time slices with +2°C (centred over 2030-2060) and +5°C (centred over 2070-2099), respectively. All three datasets were used to generate synthetic climate series using a weather simulator (model LARS-WG). No negative yield effects of climate change were observed for winter durum wheat with delayed sowing (from 330 to 345 DOY) increasing the average dry matter grain yield under forecasted scenarios. Instead, the warmer temperatures were primarily shown to accelerate the phenology, resulting in decreased yield for tomato under the + 5°C future climate scenario. In general, under global temperature increase by 5°C, early transplanting times could minimize the negative impact of climate change on crop productivity but the intensity of this effect was not sufficient to restore the current production levels of tomato cultivated in southern Italy.
Keywords: DSSAT model; climate change; winter durum wheat; tomato; sowing time; transplanting time
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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Sakschewski, B., von Bloh, W., Huber, V., Müller, C., & Bondeau, A. (2014). Feeding 10 billion people under climate change: How large is the production gap of current agricultural systems. Ecol. Model., 288, 103–111.
Abstract: The human population is projected to reach more than 10 billion in the year 2100. Together with changing consumption pattern, population growth will lead to increasing food demand. The question arises whether or not the Earth is capable of fulfilling this demand. In this study, we approach this question by estimating the carrying capacity of current agricultural systems (K-C), which does not measure the maximum number of people the Earth is likely to feed in the future, but rather allows for an indirect assessment of the increases in agricultural productivity required to meet demands. We project agricultural food production under progressing climate change using the state-of-the-art dynamic global vegetation model LPJmL, and input data of 3 climate models. For 1990 to 2100 the worldwide annual caloric yield of the most important 11 crop types is simulated. Model runs with and without elevated atmospheric CO2 concentrations are performed in order to investigate CO2 fertilization effects. Country-specific per-capita caloric demands fixed at current levels and changing demands based on future GDP projections are considered to assess the role of future dietary shifts. Our results indicate that current population projections may considerably exceed the maximum number of people that can be fed globally if climate change is not accompanied by significant changes in land use, agricultural efficiencies and/or consumption pathways. We estimate the gap between projected population size and K-C to reach 2 to 6.8 billion people by 2100. We also present possible caloric self-supply changes between 2000 and 2100 for all countries included in this study. The results show that predominantly developing countries in tropical and subtropical regions will experience vast decreases of self-supply. Therefore, this study is important for planning future large-scale agricultural management, as well as the critical assessment of population projections, which should take food-mediated climate change feedbacks into account
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Orsini, F., Alnayef, M., Bona, S., Maggio, A., & Gianquinto, G. (2012). Low stomatal density and reduced transpiration facilitate strawberry adaptation to salinity. Environmental and Experimental Botany, 81, 1–10.
Abstract: Water and soil salinization are major constraints to agricultural productions because plant adaptation to hyperosmotic environments is generally associated to reduced growth and ultimately yield loss. Understanding the physiological/molecular mechanisms that link adaptation and growth is one of the greatest challenges in plant stress research since it would allow us to better define strategies to improve crop salt tolerance. In this study we attempted to establish a functional link between morphological and physiological traits in strawberry in order to identify margins to “uncouple” plant growth and stress adaptation. Two strawberry cultivars, Elsanta and Elsinore, were grown under 0, 10.20 and 40 mM NaCl. Upon salinization Elsanta plants maintained a larger and more functional leaf area compared to Elsinore plants, which were irreversibly damaged at 40 mM NaCl. The tolerance of Elsanta was correlated with a constitutive reduced transpirational flux due to low stomata! density (173 vs. 234 stomata mm(-2) in Elsanta and Elsinore, respectively), which turned out to be critical to pre-adapt plants to the oncoming stress. The reduced transpiration rate of Elsanta (14.7 g H2O plant(-1) h(-1)) respect to Elsinore (17.7 g H2O plant(-1) h(-1)) most likely delayed the accumulation of toxic ions into the leaves, preserved tissues dehydration and consented to adjust more effectively to the hyperosmotic environment. Although we cannot rule out the contribution of other physiological and molecular mechanisms to the relatively higher tolerance of Elsanta, here we demonstrate that low stomatal density may be beneficial for cultivars prescribed to be used in marginal environments in terms of salinity and/or drought. (C) 2012 Elsevier B.V. All rights reserved.
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