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Martre, P., He, J., Le Gouis, J., & Semenov, M. A. (2015). In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management. J. Experim. Bot., 66(12), 3581–3598.
Abstract: Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work.
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Kunert, K. J., van Wyk, S. G., Cullis, C. A., Vorster, B. J., & Foyer, C. H. (2015). Potential use of phytocystatins in crop improvement, with a particular focus on legumes. J. Experim. Bot., 66(12), 3559–3570.
Abstract: Phytocystatins are a well-characterized class of naturally occurring protease inhibitors that function by preventing the catalysis of papain-like cysteine proteases. The action of cystatins in biotic stress resistance has been studied intensively, but relatively little is known about their functions in plant growth and defence responses to abiotic stresses, such as drought. Extreme weather events, such as drought and flooding, will have negative impacts on the yields of crop plants, particularly grain legumes. The concepts that changes in cellular protein content and composition are required for acclimation to different abiotic stresses, and that these adjustments are achieved through regulation of proteolysis, are widely accepted. However, the nature and regulation of the protein turnover machinery that underpins essential stress-induced cellular restructuring remain poorly characterized. Cysteine proteases are intrinsic to the genetic programmes that underpin plant development and senescence, but their functions in stress-induced senescence are not well defined. Transgenic plants including soybean that have been engineered to constitutively express phytocystatins show enhanced tolerance to a range of different abiotic stresses including drought, suggesting that manipulation of cysteine protease activities by altered phytocystatin expression in crop plants might be used to improve resilience and quality in the face of climate change.
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Jabloun, M., Schelde, K., Tao, F., & Olesen, J. E. (2015). Effect of temperature and precipitation on nitrate leaching from organic cereal cropping systems in Denmark. European Journal of Agronomy, 62, 55–64.
Abstract: The effect of variation in seasonal temperature and precipitation on soil water nitrate (NO3-N) concentration and leaching from winter and spring cereals cropping systems was investigated over three consecutive four-year crop rotation cycles from 1997 to 2008 in an organic farming crop rotation experiment in Denmark. Three experimental sites, varying in climate and soil type from coarse sand to sandy loam, were investigated. The experiment included experimental treatments with different rotations, manure rate and cover crop, and soil nitrate concentrations was monitored using suction cups. The effects of climate, soil and management were examined in a linear mixed model, and only parameters with significant effect (P < 0.05) were included in the final model. The model explained 61% and 47% of the variation in the square root transform of flow-weighted annual NO3-N concentration for winter and spring cereals, respectively, and 68% and 77% of the variation in the square root transform of annual NO3-N leaching for winter and spring cereals, respectively. Nitrate concentration and leaching were shown to be site specific and driven by climatic factors and crop management. There were significant effects on annual N concentration and NO3-N leaching of location, rotation, previous crop and crop cover during autumn and winter. The relative effects of temperature and precipitation differed between seasons and cropping systems. A sensitivity analysis revealed that the predicted N concentration and leaching increased with increases in temperature and precipitation. (C) 2014 Elsevier B.V. All rights reserved.
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Heinemann, A. B., Barrios-Perez, C., Ramirez-Villegas, J., Arango-Londoño, D., Bonilla-Findji, O., Medeiros, J. C., et al. (2015). Variation and impact of drought-stress patterns across upland rice target population of environments in Brazil. J. Experim. Bot., 66(12), 3625–3638.
Abstract: The upland rice (UR) cropped area in Brazil has decreased in the last decade. Importantly, a portion of this decrease can be attributed to the current UR breeding programme strategy, according to which direct grain yield selection is targeted primarily to the most favourable areas. New strategies for more-efficient crop breeding under non-optimal conditions are needed for Brazil’s UR regions. Such strategies should include a classification of spatio-temporal yield variations in environmental groups, as well as a determination of prevalent drought types and their characteristics (duration, intensity, phenological timing, and physiological effects) within those environmental groups. This study used a process-based crop model to support the Brazilian UR breeding programme in their efforts to adopt a new strategy that accounts for the varying range of environments where UR is currently cultivated. Crop simulations based on a commonly grown cultivar (BRS Primavera) and statistical analyses of simulated yield suggested that the target population of environments can be divided into three groups of environments: a highly favorable environment (HFE, 19% of area), a favorable environment (FE, 44%), and least favourable environment (LFE, 37%). Stress-free conditions dominated the HFE group (69% likelihood) and reproductive stress dominated the LFE group (68% likelihood), whereas reproductive and terminal drought stress were found to be almost equally likely to occur in the FE group. For the best and worst environments, we propose specific adaptation focused on the representative stress, while for the FE, wide adaptation to drought is suggested. ‘Weighted selection’ is also a possible strategy for the FE and LFE environment groups.
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Dockter, C., & Hansson, M. (2015). Improving barley culm robustness for secured crop yield in a changing climate. J. Experim. Bot., 66(12), 3499–3509.
Abstract: The Green Revolution combined advancements in breeding and agricultural practice, and provided food security to millions of people. Daily food supply is still a major issue in many parts of the world and is further challenged by future climate change. Fortunately, life science research is currently making huge progress, and the development of future crop plants will be explored. Today, plant breeding typically follows one gene per trait. However, new scientific achievements have revealed that many of these traits depend on different genes and complex interactions of proteins reacting to various external stimuli. These findings open up new possibilities for breeding where variations in several genes can be combined to enhance productivity and quality. In this review we present an overview of genes determining plant architecture in barley, with a special focus on culm length. Many genes are currently known only through their mutant phenotypes, but emerging genomic sequence information will accelerate their identification. More than 1000 different short-culm barley mutants have been isolated and classified in different phenotypic groups according to culm length and additional pleiotropic characters. Some mutants have been connected to deficiencies in biosynthesis and reception of brassinosteroids and gibberellic acids. Still other mutants are unlikely to be connected to these hormones. The genes and corresponding mutations are of potential interest for development of stiff-straw crop plants tolerant to lodging, which occurs in extreme weather conditions with strong winds and heavy precipitation.
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