Jabloun, M., Schelde, K., Tao, F., & Olesen, J. E. (2015). Effect of temperature and precipitation on nitrate leaching from organic cereal cropping systems in Denmark. European Journal of Agronomy, 62, 55–64.
Abstract: The effect of variation in seasonal temperature and precipitation on soil water nitrate (NO3-N) concentration and leaching from winter and spring cereals cropping systems was investigated over three consecutive four-year crop rotation cycles from 1997 to 2008 in an organic farming crop rotation experiment in Denmark. Three experimental sites, varying in climate and soil type from coarse sand to sandy loam, were investigated. The experiment included experimental treatments with different rotations, manure rate and cover crop, and soil nitrate concentrations was monitored using suction cups. The effects of climate, soil and management were examined in a linear mixed model, and only parameters with significant effect (P < 0.05) were included in the final model. The model explained 61% and 47% of the variation in the square root transform of flow-weighted annual NO3-N concentration for winter and spring cereals, respectively, and 68% and 77% of the variation in the square root transform of annual NO3-N leaching for winter and spring cereals, respectively. Nitrate concentration and leaching were shown to be site specific and driven by climatic factors and crop management. There were significant effects on annual N concentration and NO3-N leaching of location, rotation, previous crop and crop cover during autumn and winter. The relative effects of temperature and precipitation differed between seasons and cropping systems. A sensitivity analysis revealed that the predicted N concentration and leaching increased with increases in temperature and precipitation. (C) 2014 Elsevier B.V. All rights reserved.
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Kersebaum, K. C., Boote, K. J., Jorgenson, J. S., Nendel, C., Bindi, M., Frühauf, C., et al. (2015). Analysis and classification of data sets for calibration and validation of agro-ecosystem models. Env. Model. Softw., 72, 402–417.
Abstract: Experimental field data are used at different levels of complexity to calibrate, validate and improve agroecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regarding their suitability for different modelling purposes. Weighting of inputs and variables for testing was set from the aspect of crop modelling. The software allows users to adjust weights according to their specific requirements. Background information is given for the variables with respect to their relevance for modelling and possible uncertainties. Examples are given for data sets of the different classes. The framework helps to assemble high quality data bases, to select data from data bases according to modellers requirements and gives guidelines to experimentalists for experimental design and decide on the most effective measurements to improve the usefulness of their data for modelling, statistical analysis and data assimilation. (C) 2015 Elsevier Ltd. All rights reserved.
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Martre, P., He, J., Le Gouis, J., & Semenov, M. A. (2015). In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management. J. Experim. Bot., 66(12), 3581–3598.
Abstract: Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work.
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De Pascale, S., Orsini, F., Caputo, R., Palermo, M. A., Barbieri, G., & Maggio, A. (2012). Seasonal and multiannual effects of salinisation on tomato yield and fruit quality. Functional Plant Biology, 39(8), 689–698.
Abstract: The effects of short-and long-term salinisation were studied by comparing tomato growth on a soil exposed to one-season salinisation (short term) vs growth on a soil exposed to >20 years salinisation (long term). Remarkable differences were associated to substantial modifications of the soil physical-chemical characteristics in the root zone, including deteriorated structure, reduced infiltration properties and increased pH. Fresh yield, fruit number and fruit weight were similarly affected by short-and long-term salinisation. In contrast, the marketable yield was significantly lower in the long-term salinised soil-a response that was also associated to nutritional imbalance (mainly referred to P and K). As reported for plants growing under oxygen deprivation stress, the antioxidant capacity of the water soluble fraction of salinised tomato fruits was enhanced by short-term salinisation, also. Overall, long-term salinisation may cause physiological imbalances and yield reductions that cannot be solely attributed to hyperosmotic stress and ionic toxicity. Therefore, the ability of plants to cope with nutritional deficiency and withstand high pH and anoxia may be important traits that should be considered to improve plant tolerance to long-term salinised soils.
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Dumont, B., Vancutsem, F., Seutin, B., Bodson, B., Destain, J. - P., & Destain, M. - F. (2012). Simulation de la croissance du blé à l’aide de modèles écophysiologiques: Synthèse bibliographique des méthodes, potentialités et limitations. Biotechnologie, Agronomie, Société et Environnement, 163, 376–386.
Abstract: Crop models describe the growth and development of a crop interacting with its surrounding agro-environmental conditions (soil, climate and the close conditions of the plant). However, the implementation of such models remains difficult because of the high number of explanatory variables and parameters. It often happens that important discrepancies appear between measured and simulated values. This article aims to highlight the different sources of uncertainty related to the use of crop models, as well as the actual methods that allow a compensation for or, at least, a consideration of these sources of error during analysis of the model results. This article presents a literature review, which firstly synthesises the general mathematical structure of crop models. The main criteria for evaluating crop models are then described. Finally, several methods used for improving models are given. Parameter estimation methods, including frequentist and Bayesian approaches, are presented and data assimilation methods are reviewed.
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