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Hjelkrem, A.-G.R.; Höglind, M.; van Oijen, M.; Schellberg, J.; Gaiser, T.; Ewert, F. |
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Title |
Sensitivity analysis and Bayesian calibration for testing robustness of the BASGRA model in different environments |
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Journal Article |
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Year |
2017 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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359 |
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80-91 |
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Keywords |
Metropolis-hasting; Morris method; Reducing complexity; Robustness |
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Highlights • The parameters to be fixed were consistent across sites. • Model calibration must be performed separately for each specific case. • Possible to reduce model parameters from 66 to 45. • Strong model reductions must be avoided. • The error term for the training data were characterised by timing (phase shift). Abstract Proper parameterisation and quantification of model uncertainty are two essential tasks in improvement and assessment of model performance. Bayesian calibration is a method that combines both tasks by quantifying probability distributions for model parameters and outputs. However, the method is rarely applied to complex models because of its high computational demand when used with high-dimensional parameter spaces. We therefore combined Bayesian calibration with sensitivity analysis, using the screening method by Morris (1991), in order to reduce model complexity by fixing parameters to which model output was only weakly sensitive to a nominal value. Further, the robustness of the model with respect to reduction in the number of free parameters were examined according to model discrepancy and output uncertainty. The process-based grassland model BASGRA was examined in the present study on two sites in Norway and in Germany, for two grass species (Phleum pratense and Arrhenatherum elatius). According to this study, a reduction of free model parameters from 66 to 45 was possible. The sensitivity analysis showed that the parameters to be fixed were consistent across sites (which differed in climate and soil conditions), while model calibration had to be performed separately for each combination of site and species. The output uncertainty decreased slightly, but still covered the field observations of aboveground biomass. Considering the training data, the mean square error for both the 66 and the 45 parameter model was dominated by errors in timing (phase shift), whereas no general pattern was found in errors when using the validation data. Stronger model reduction should be avoided, as the error term increased and output uncertainty was underestimated. |
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0304-3800 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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5010 |
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Korhonen, P.; Palosuo, T.; Höglind, M.; Persson, T.; van Oijen, M.; Jego, G.; Virkajärvi, P.; Belanger, G.; Gustavsson, A.M. |
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Title |
Intercomparison of models for simulating timothy yield in Northern countries. The multiple roles of grassland in the European bioeconomy |
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Conference Article |
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2016 |
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Trondheim, Norway |
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General Meeting of the European Grassland Federation |
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26 |
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General Meeting of the European Grassland Federation, 2016-09-04 to 2016-09-08, Trondheim, Norway 26: |
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MA @ admin @ |
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5168 |
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Özkan Gülzari, Ş.; Åby, B.A.; Persson, T.; Höglind, M.; Mittenzwei, K. |
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Title |
Combining models to estimate the impacts of future climate scenarios on feed supply, greenhouse gas emissions and economic performance on dairy farms in Norway |
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Journal Article |
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2017 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
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157 |
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157-169 |
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Climate change; Dairy farming; Dry matter yield; Economics; Greenhouse gas emission; Modelling |
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• This study combines crop, livestock and economic models.
• Models interaction is through use of relevant input and output variables.
• Future climate change will result in increased grass and wheat dry matter yields.
• Changes in grass, wheat and milk yields in future reduce farm emissions intensity.
• Changes in future dry matter yields and emissions lead to increased profitability.
There is a scientific consensus that the future climate change will affect grass and crop dry matter (DM) yields. Such yield changes may entail alterations to farm management practices to fulfill the feed requirements and reduce the farm greenhouse gas (GHG) emissions from dairy farms. While a large number of studies have focused on the impacts of projected climate change on a single farm output (e.g. GHG emissions or economic performance), several attempts have been made to combine bio-economic systems models with GHG accounting frameworks. In this study, we aimed to determine the physical impacts of future climate scenarios on grass and wheat DM yields, and demonstrate the effects such changes in future feed supply may have on farm GHG emissions and decision-making processes. For this purpose, we combined four models: BASGRA and CSM-CERES-Wheat models for simulating forage grass DM and wheat DM grain yields respectively; HolosNor for estimating the farm GHG emissions; and JORDMOD for calculating the impacts of changes in the climate and management on land use and farm economics. Four locations, with varying climate and soil conditions were included in the study: south-east Norway, south-west Norway, central Norway and northern Norway. Simulations were carried out for baseline (1961–1990) and future (2046–2065) climate conditions (projections based on two global climate models and the Special Report on Emissions Scenarios (SRES) A1B GHG emission scenario), and for production conditions with and without a milk quota. The GHG emissions intensities (kilogram carbon dioxide equivalent: kgCO2e emissions per kg fat and protein corrected milk: FPCM) varied between 0.8 kg and 1.23 kg CO2e (kg FPCM)− 1, with the lowest and highest emissions found in central Norway and south-east Norway, respectively. Emission intensities were generally lower under future compared to baseline conditions due mainly to higher future milk yields and to some extent to higher crop yields. The median seasonal above-ground timothy grass yield varied between 11,000 kg and 16,000 kg DM ha− 1 and was higher in all projected future climate conditions than in the baseline. The spring wheat grain DM yields simulated for the same weather conditions within each climate projection varied between 2200 kg and 6800 kg DM ha− 1. Similarly, the farm profitability as expressed by total national land rents varied between 1900 million Norwegian krone (NOK) for median yields under baseline climate conditions up to 3900 million NOK for median yield under future projected climate conditions. |
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phase 2 |
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CropM, LiveM, TradeM, ft_macsur |
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MA @ admin @ |
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5172 |
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Korhonen, P.; Palosuo, T.; Persson, T.; Höglind, M.; Jego, G.; Van Oijen, M.; Gustavsson, A.-M.; Belanger, G.; Virkajärvi, P. |
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Title |
Modelling grass yields in northern climates – a comparison of three growth models for timothy |
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Journal Article |
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2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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224 |
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37-47 |
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Keywords |
Forage grass; Model comparison; Timothy; Uncertainty; Yield; Nutritive-Value; Catimo Model; Nitrogen Balances; Simulation; Regrowth; Wheat; Stics; Dynamics; Harvest; Water |
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During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratertse L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil -crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development. |
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2018-07-12 |
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English |
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0378-4290 |
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CropM, ft_macsur |
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MA @ admin @ |
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5206 |
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Van Oijen, M.; Höglind, M. |
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Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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2016 |
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Euphytica |
Abbreviated Journal |
Euphytica |
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207 |
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3 |
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627-643 |
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BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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English |
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0014-2336 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4820 |
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Permanent link to this record |