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Hoffmann, H., Zhao, G., Asseng, S., Bindi, M., Biernath, C., Constantin, J., et al. (2016). Impact of spatial soil and climate input data aggregation on regional yield simulations. PLoS One, 11(4), e0151782.
Abstract: We show the error in water-limited yields simulated by crop models which is associated with spatially aggregated soil and climate input data. Crop simulations at large scales (regional, national, continental) frequently use input data of low resolution. Therefore, climate and soil data are often generated via averaging and sampling by area majority. This may bias simulated yields at large scales, varying largely across models. Thus, we evaluated the error associated with spatially aggregated soil and climate data for 14 crop models. Yields of winter wheat and silage maize were simulated under water-limited production conditions. We calculated this error from crop yields simulated at spatial resolutions from 1 to 100 km for the state of North Rhine-Westphalia, Germany. Most models showed yields biased by <15% when aggregating only soil data. The relative mean absolute error (rMAE) of most models using aggregated soil data was in the range or larger than the inter-annual or inter-model variability in yields. This error increased further when both climate and soil data were aggregated. Distinct error patterns indicate that the rMAE may be estimated from few soil variables. Illustrating the range of these aggregation effects across models, this study is a first step towards an ex-ante assessment of aggregation errors in large-scale simulations.
Keywords: systems simulation; nitrogen dynamics; winter-wheat; crop models; data resolution; scale; water; variability; calibration; weather
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Hoffmann, H., Zhao, G., van Bussel, L. G. J., Enders, A., Specka, X., Sosa, C., et al. (2015). Variability of effects of spatial climate data aggregation on regional yield simulation by crop models. Clim. Res., 65, 53–69.
Abstract: Field-scale crop models are often applied at spatial resolutions coarser than that of the arable field. However, little is known about the response of the models to spatially aggregated climate input data and why these responses can differ across models. Depending on the model, regional yield estimates from large-scale simulations may be biased, compared to simulations with high-resolution input data. We evaluated this so-called aggregation effect for 13 crop models for the region of North Rhine-Westphalia in Germany. The models were supplied with climate data of 1 km resolution and spatial aggregates of up to 100 km resolution raster. The models were used with 2 crops (winter wheat and silage maize) and 3 production situations (potential, water-limited and nitrogen-water-limited growth) to improve the understanding of errors in model simulations related to data aggregation and possible interactions with the model structure. The most important climate variables identified in determining the model-specific input data aggregation on simulated yields were mainly related to changes in radiation (wheat) and temperature (maize). Additionally, aggregation effects were systematic, regardless of the extent of the effect. Climate input data aggregation changed the mean simulated regional yield by up to 0.2 t ha(-1), whereas simulated yields from single years and models differed considerably, depending on the data aggregation. This implies that large-scale crop yield simulations are robust against climate data aggregation. However, large-scale simulations can be systematically biased when being evaluated at higher temporal or spatial resolution depending on the model and its parameterization.
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Kim, Y., Seo, Y., Kraus, D., Klatt, S., Haas, E., Tenhunen, J., et al. (2015). Estimation and mitigation of N₂O emission and nitrate leaching from intensive crop cultivation in the Haean catchment, South Korea. Science of the Total Environment, 529, 40–53.
Abstract: Considering intensive agricultural management practices and environmental conditions, the LandscapeDNDC model was applied for simulation of yields, N2O emission and nitrate leaching from major upland crops and temperate deciduous forest of the Haean catchment, South Korea. Fertilization rates were high (up to 314 kg N ha(-1) year(-1)) and resulted in simulated direct N2O emissions from potato, radish, soybean and cabbage fields of 1.9 and 2.1 kg N ha(-1) year(-1) in 2009 and 2010, respectively. Nitrate leaching was identified as the dominant pathway of N losses in the Haean catchment with mean annual rates of 112.2 and 125.4 kg N ha(-1) year(-1), causing threats to water quality and leading to substantial indirect N2O emissions of 0.84 and 0.94 kg N ha(-1) year(-1) in 2009 and 2010 as estimates by applying the IPCC EF5. Simulated N2O emissions from temperate deciduous forest were low (approx. 0.50 kg N ha(-1) year(-1)) and predicted nitrate leaching rates were even negligible (≤0.01 kg N ha(-1) year(-1)). On catchment scale more than 50% of the total N2O emissions and up to 75% of nitrate leaching originated from fertilized upland fields, only covering 24% of the catchment area. Taking into account area coverage of simulated upland crops and other land uses these numbers agree well with nitrate loads calculated from discharge and concentration measurements at the catchment outlet. The change of current agricultural management practices showed a high potential of reducing N2O emission and nitrate leaching while maintaining current crop yields. Reducing (39%) and splitting N fertilizer application into 3 times was most effective and lead to about 54% and 77% reducing of N2O emission and nitrate leaching from the Haean catchment, the latter potentially contributing to improved water quality in the Soyang River Dam, which is the major source of drinking water for metropolitan residents.
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Vitali, A., Lana, E., Amadori, M., Bernabucci, U., Nardone, A., & Lacetera, N. (2014). Analysis of factors associated with mortality of heavy slaughter pigs during transport and lairage. J. Anim. Sci., 92(11), 5134–5141.
Abstract: The study was based on data collected during 5 yr (2003-2007) and was aimed at assessing the effects of the month, slaughter house of destination (differing for stocking density, openings, brightness, and cooling device types), length of the journey, and temperature-humidity index (THI) on mortality of heavy slaughter pigs (approximately 160 kg live weight) during transport and lairage. Data were obtained from 24,098 journeys and 3,676,153 pigs transported from 1,618 farms to 3 slaughter houses. Individual shipments were the unit of observation. The terms dead on arrival (DOA) and dead in pen (DIP) refer to pigs that died during transport and in lairage at the abattoir before slaughtering, respectively. These 2 variables were assessed as the dependent counts in separate univariate Poisson regressions. The independent variables assessed univariately in each set of regressions were month of shipment, slaughter house of destination, time traveled, and each combination of the month with the time traveled. Two separate piecewise regressions were done. One used DOA counts within THI levels over pigs transported as a dependent ratio and the second used DIP counts within THI levels over pigs from a transport kept in lairage as a dependent ratio. The THI was the sole independent variable in each case. The month with the greatest frequency of deaths was July with a risk ratio of 1.22 (confidence interval: 1.06-1.36; P < 0.05) and 1.27 (confidence interval: 1.06-1.51; P < 0.05) for DOA and DIP, respectively. The lower mortality risk ratios for DOA and DIP were recorded for January and March (P < 0.05). The aggregated data of the summer (June, July, and August) versus non-summer (January, March, September, and November) months showed a greater risk of pigs dying during the hot season when considering both transport and lairage (P < 0.05). The mortality risk ratio of DIP was lower at the slaughter house with the lowest stocking density (0.64 m(2)/100 kg live weight), large open windows on the roof and sidewalls, low brightness (40 lx) lights, and high-pressure sprinklers as cooling devices. The mortality risk ratio of DOA increased significantly for journeys longer than 2 h, whereas no relationship was found between length of transport and DIP. The piecewise analysis pointed out that 78.5 and 73.6 THI were the thresholds above which the mortality rate increased significantly for DOA and DIP, respectively. These results may help the pig industry to improve the welfare of heavy slaughter pigs during transport and lairage.
Keywords: Abattoirs/*statistics & numerical data; Animals; *Data Interpretation, Statistical; Humidity/adverse effects; Light/adverse effects; *Mortality; Retrospective Studies; Seasons; Swine/*physiology; Temperature; Time Factors; Transportation/*statistics & numerical data; lairage; mortality; pigs; temperature-humidity index; transport
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Mansouri, M., Dumont, B., Leemans, V., & Destain, M. - F. (2014). Bayesian methods for predicting LAI and soil water content. Precision Agric., 15(2), 184–201.
Abstract: LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation.
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