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Sanna, M., Bellocchi, G., Fumagalli, M., & Acutis, M. (2015). A new method for analysing the interrelationship between performance indicators with an application to agrometeorological models. Env. Model. Softw., 73, 286–304.
Abstract: The use of a variety of metrics is advocated to assess model performance but correlated metrics may convey the same information, thus leading to redundancy. Starting from this assumption, a method was developed for selecting, from among a collection of performance indicators, one or more subsets providing the same information as the entire set. The method, based on the definition of “stable correlation”, was applied to 23 performance indicators of agrometeorological models, calculated on large sets of simulated and observed data of four agronomic and meteorological variables: above-ground biomass, leaf area index, hourly air relative humidity and daily solar radiation. Two subsets were determined: {Squared Bias, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index, Modified Modelling Efficiency}, {Persistence Model Efficiency, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index}. The method needs corroboration but is statistically founded and can support the implementation of standardized evaluation tools. (C) 2015 Elsevier Ltd. All rights reserved.
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Grosz, B., Dechow, R., Gebbert, S., Hoffmann, H., Zhao, G., Constantin, J., et al. (2017). The implication of input data aggregation on up-scaling soil organic carbon changes. Env. Model. Softw., 96, 361–377.
Abstract: In up-scaling studies, model input data aggregation is a common method to cope with deficient data availability and limit the computational effort. We analyzed model errors due to soil data aggregation for modeled SOC trends. For a region in North West Germany, gridded soil data of spatial resolutions between 1 km and 100 km has been derived by majority selection. This data was used to simulate changes in SOC for a period of 30 years by 7 biogeochemical models. Soil data aggregation strongly affected modeled SOC trends. Prediction errors of simulated SOC changes decreased with increasing spatial resolution of model output. Output data aggregation only marginally reduced differences of model outputs between models indicating that errors caused by deficient model structure are likely to persist even if requirements on the spatial resolution of model outputs are low. (C)2017 Elsevier Ltd. All rights reserved.
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Klosterhalfen, A., Herbst, M., Weihermueller, L., Graf, A., Schmidt, M., Stadler, A., et al. (2017). Multi-site calibration and validation of a net ecosystem carbon exchange model for croplands. Ecol. Model., 363, 137–156.
Abstract: Croplands play an important role in the carbon budget of many regions. However, the estimation of their carbon balance remains difficult due to diversity and complexity of the processes involved. We report the coupling of a one-dimensional soil water, heat, and CO2 flux model (SOILCO2), a pool concept of soil carbon turnover (RothC), and a crop growth module (SUCROS) to predict the net ecosystem exchange (NEE) of carbon. The coupled model, further referred to as AgroC, was extended with routines for managed grassland as well as for root exudation and root decay. In a first step, the coupled model was applied to two winter wheat sites and one upland grassland site in Germany. The model was calibrated based on soil water content, soil temperature, biometric, and soil respiration measurements for each site, and validated in terms of hourly NEE measured with the eddy covariance technique. The overall model performance of AgroC was sufficient with a model efficiency above 0.78 and a correlation coefficient above 0.91 for NEE. In a second step, AgroC was optimized with eddy covariance NEE measurements to examine the effect of different objective functions, constraints, and data-transformations on estimated NEE. It was found that NEE showed a distinct sensitivity to the choice of objective function and the inclusion of soil respiration data in the optimization process. In particular, both positive and negative day- and nighttime fluxes were found to be sensitive to the selected optimization strategy. Additional consideration of soil respiration measurements improved the simulation of small positive fluxes remarkably. Even though the model performance of the selected optimization strategies did not diverge substantially, the resulting cumulative NEE over simulation time period differed substantially. Therefore, it is concluded that data transformations, definitions of objective functions, and data sources have to be considered cautiously when a terrestrial ecosystem model is used to determine NEE by means of eddy covariance measurements. (C) 2017 Elsevier B.V. All rights reserved.
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Ben Touhami, H., & Bellocchi, G. (2015). Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress. Ecological Informatics, 30, 356–364.
Abstract: As modeling becomes a more widespread practice in the agro-environmental sciences, scientists need reliable tools to calibrate models against ever more complex and detailed data. We present a generic Bayesian computation framework for grassland simulation, which enables parameter estimation in the Bayesian formalism by using Monte Carlo approaches. We outline the underlying rationale, discuss the computational issues, and provide results from an application of the Pasture Simulation model (PaSim) to three European grasslands. The framework was suited to investigate the challenging problem of calibrating complex biophysical models to data from altered scenarios generated by precipitation reduction (water stress conditions). It was used to infer the parameters of manipulated grassland systems and to assess the gain in uncertainty reduction by updating parameter distributions using measurements of the output variables.
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Lorite, I. J., García-Vila, M., Santos, C., Ruiz-Ramos, M., & Fereres, E. (2013). AquaData and AquaGIS: Two computer utilities for temporal and spatial simulations of water-limited yield with AquaCrop. Computers and Electronics in Agriculture, 96, 227–237.
Abstract: The crop simulation model AquaCrop, recently developed by FAO can be used for a wide range of purposes. However, in its present form, its use over large areas or for applications that require a large number of simulations runs (e.g., long-term analysis), is not practical without developing software to facilitate such applications. Two tools for managing the inputs and outputs of AquaCrop, named AquaData and AquaGIS, have been developed for this purpose and are presented here. Both software utilities have been programmed in Delphi v. 5 and in addition, AquaGIS requires the Geographic Information System (GIS) programming tool MapObjects. These utilities allow the efficient management of input and output files, along with a GIS module to develop spatial analysis and effect spatial visualization of the results, facilitating knowledge dissemination. A sample of application of the utilities is given here, as an AquaCrop simulation analysis of impact of climate change on wheat yield in Southern Spain, which requires extensive input data preparation and output processing. The use of AquaCrop without the two utilities would have required approximately 1000 h of work, while the utilization of AquaData and AquaGIS reduced that time by more than 99%. Furthermore, the use of GIS, made it possible to perform a spatial analysis of the results, thus providing a new option to extend the use of the AquaCrop model to scales requiring spatial and temporal analyses. (C) 2013 Elsevier B.V. All rights reserved.
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