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Author |
Heinemann, A.B.; Barrios-Perez, C.; Ramirez-Villegas, J.; Arango-Londoño, D.; Bonilla-Findji, O.; Medeiros, J.C.; Jarvis, A. |
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Title |
Variation and impact of drought-stress patterns across upland rice target population of environments in Brazil |
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Journal Article |
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Year |
2015 |
Publication  |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3625-3638 |
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Keywords |
Brazil; Climate; Computer Simulation; Crops, Agricultural/physiology; *Droughts; *Environment; Geography; Oryza/*physiology; Plant Transpiration; *Stress, Physiological; Water; Breeding; Oryza sativa; environment classification; modelling; water deficit. |
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Abstract |
The upland rice (UR) cropped area in Brazil has decreased in the last decade. Importantly, a portion of this decrease can be attributed to the current UR breeding programme strategy, according to which direct grain yield selection is targeted primarily to the most favourable areas. New strategies for more-efficient crop breeding under non-optimal conditions are needed for Brazil’s UR regions. Such strategies should include a classification of spatio-temporal yield variations in environmental groups, as well as a determination of prevalent drought types and their characteristics (duration, intensity, phenological timing, and physiological effects) within those environmental groups. This study used a process-based crop model to support the Brazilian UR breeding programme in their efforts to adopt a new strategy that accounts for the varying range of environments where UR is currently cultivated. Crop simulations based on a commonly grown cultivar (BRS Primavera) and statistical analyses of simulated yield suggested that the target population of environments can be divided into three groups of environments: a highly favorable environment (HFE, 19% of area), a favorable environment (FE, 44%), and least favourable environment (LFE, 37%). Stress-free conditions dominated the HFE group (69% likelihood) and reproductive stress dominated the LFE group (68% likelihood), whereas reproductive and terminal drought stress were found to be almost equally likely to occur in the FE group. For the best and worst environments, we propose specific adaptation focused on the representative stress, while for the FE, wide adaptation to drought is suggested. ‘Weighted selection’ is also a possible strategy for the FE and LFE environment groups. |
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0022-0957 1460-2431 |
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CropM |
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MA @ admin @ |
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4560 |
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Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
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Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
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Journal Article |
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Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
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Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
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Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
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2020-02-14 |
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0022-0957 |
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LiveM, ft_macsur |
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MA @ admin @ |
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5231 |
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Semenov, M.A.; Stratonovitch, P.; Alghabari, F.; Gooding, M.J. |
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Title |
Adapting wheat in Europe for climate change |
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Journal Article |
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2014 |
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Journal of Cereal Science |
Abbreviated Journal |
J. Ceareal Sci. |
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59 |
Issue |
3 |
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245-256 |
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Keywords |
A, maximum area of flag leaf area; ABA, abscisic acid; CV, coefficient of variation; Crop improvement; Crop modelling; FC, field capacity; GMT, Greenwich mean time; GS, growth stage; Gf, grain filling duration; HI, harvest index; HSP, heat shock protein; Heat and drought tolerance; Impact assessment; LAI, leaf area index; Ph, phylochron; Pp, photoperiod response; Ru, root water uptake; S, duration of leaf senescence; SF, drought stress factor; Sirius; Wheat ideotype |
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Increasing cereal yield is needed to meet the projected increased demand for world food supply of about 70% by 2050. Sirius, a process-based model for wheat, was used to estimate yield potential for wheat ideotypes optimized for future climatic projections for ten wheat growing areas of Europe. It was predicted that the detrimental effect of drought stress on yield would be decreased due to enhanced tailoring of phenology to future weather patterns, and due to genetic improvements in the response of photosynthesis and green leaf duration to water shortage. Yield advances could be made through extending maturation and thereby improve resource capture and partitioning. However the model predicted an increase in frequency of heat stress at meiosis and anthesis. Controlled environment experiments quantify the effects of heat and drought at booting and flowering on grain numbers and potential grain size. A current adaptation of wheat to areas of Europe with hotter and drier summers is a quicker maturation which helps to escape from excessive stress, but results in lower yields. To increase yield potential and to respond to climate change, increased tolerance to heat and drought stress should remain priorities for the genetic improvement of wheat. |
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0733-5210 |
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Review |
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CropM, ft_macsur |
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MA @ admin @ |
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4543 |
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Waha, K.; Müller, C.; Bondeau, A.; Dietrich, J.P.; Kurukulasuriya, P.; Heinke, J.; Lotze-Campen, H. |
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Title |
Adaptation to climate change through the choice of cropping system and sowing date in sub-Saharan Africa |
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Journal Article |
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2013 |
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Global Environmental Change |
Abbreviated Journal |
Glob. Environ. Change |
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23 |
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1 |
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130-143 |
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Keywords |
multiple cropping; sequential cropping systems; crop modelling; agricultural management; adaptation options; global vegetation model; future food-production; rainy-season; west-africa; agriculture; yield; maize; soil; variability; heat |
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Multiple cropping systems provide more harvest security for farmers, allow for crop intensification and furthermore influence ground cover, soil erosion, albedo, soil chemical properties, pest infestation and the carbon sequestration potential. We identify the traditional sequential cropping systems in ten sub-Saharan African countries from a survey dataset of more than 8600 households. We find that at least one sequential cropping system is traditionally used in 35% of all administrative units in the dataset, mainly including maize or groundnuts. We compare six different management scenarios and test their susceptibility as adaptation measure to climate change using the dynamic global vegetation model for managed land LPJmL. Aggregated mean crop yields in sub-Saharan Africa decrease by 6-24% due to climate change depending on the climate scenario and the management strategy. As an exception, some traditional sequential cropping systems in Kenya and South Africa gain by at least 25%. The crop yield decrease is typically weakest in sequential cropping systems and if farmers adapt the sowing date to changing climatic conditions. Crop calorific yields in single cropping systems only reach 40-55% of crop calorific yields obtained in sequential cropping systems at the end of the 21st century. The farmers’ choice of adequate crops, cropping systems and sowing dates can be an important adaptation strategy to climate change and these management options should be considered in climate change impact studies on agriculture. (C) 2012 Elsevier Ltd. All rights reserved. |
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2016-10-31 |
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0959-3780 |
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CropM |
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MA @ admin @ |
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4823 |
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van Bussel, L.G.J.; Stehfest, E.; Siebert, S.; Müller, C.; Ewert, F. |
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Title |
Simulation of the phenological development of wheat and maize at the global scale |
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Journal Article |
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2015 |
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Global Ecology and Biogeography |
Abbreviated Journal |
Glob. Ecol. Biogeogr. |
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24 |
Issue |
9 |
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1018-1029 |
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Agricultural management; crop calendars; cultivar; variety characteristics; global crop modelling; global harvest dates; phenology; climate-change; winter-wheat; annual crops; photoperiod sensitivity; geographical variation; temperature; responses; adaptation; cultivars; model |
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AimTo derive location-specific parameters that reflect the geographic differences among cultivars in vernalization requirements, sensitivity to day length (photoperiod) and temperature, which can be used to simulate the phenological development of wheat and maize at the global scale. LocationGlobal. Methods Based on crop calendar observations and literature describing the large-scale patterns of phenological characteristics of cultivars, we developed algorithms to compute location-specific parameters to represent this large-scale pattern. Vernalization requirements were related to the duration and coldness of winter, sensitivity to day length was assumed to be represented by the minimum and maximum day lengths occurring at a location, and sensitivity to temperature was related to temperature conditions during the vegetative development phase of the crop. Results Application of the derived location-specific parameters resulted in high agreement between simulated and observed lengths of the cropping period. Agreement was especially high for wheat, with mean absolute errors of less than 3 weeks. In the main maize cropping regions, cropping periods were over- and underestimated by 0.5-1.5 months. We also found that interannual variability in simulated wheat harvest dates was more realistic when accounting for photoperiod effects. Main conclusions The methodology presented here provides a good basis for modelling the phenological characteristics of cultivars at the global scale. We show that current global patterns of growing season length as described in cropping calendars can be largely reproduced by phenology models if location-specific parameters are derived from temperature and day length indicators. Growing seasons can be modelled more accurately for wheat than for maize, especially in warm regions. Our method for computing parameters for phenology models from temperature and day length offers opportunities to improve the simulation of crop productivity by crop simulation models developed for large spatial areas and for long-term climate impact projections that account for adaptation in the selection of varieties |
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1466-822x |
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CropM, ft_macsur |
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MA @ admin @ |
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4729 |
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