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Martre, P., He, J., Le Gouis, J., & Semenov, M. A. (2015). In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management. J. Experim. Bot., 66(12), 3581–3598.
Abstract: Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work.
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Eitzinger, J., Thaler, S., Schmid, E., Strauss, F., Ferrise, R., Moriondo, M., et al. (2013). Sensitivities of crop models to extreme weather conditions during flowering period demonstrated for maize and winter wheat in Austria. J. Agric. Sci., 151(6), 813–835.
Abstract: The objective of the present study was to compare the performance of seven different, widely applied crop models in predicting heat and drought stress effects. The study was part of a recent suite of model inter-comparisons initiated at European level and constitutes a component that has been lacking in the analysis of sources of uncertainties in crop models used to study the impacts of climate change. There was a specific focus on the sensitivity of models for winter wheat and maize to extreme weather conditions (heat and drought) during the short but critical period of 2 weeks after the start of flowering. Two locations in Austria, representing different agro-climatic zones and soil conditions, were included in the simulations over 2 years, 2003 and 2004, exhibiting contrasting weather conditions. In addition, soil management was modified at both sites by following either ploughing or minimum tillage. Since no comprehensive field experimental data sets were available, a relative comparison of simulated grain yields and soil moisture contents under defined weather scenarios with modified temperatures and precipitation was performed for a 2-week period after flowering. The results may help to reduce the uncertainty of simulated crop yields to extreme weather conditions through better understanding of the models’ behaviour. Although the crop models considered (DSSAT, EPIC, WOFOST, AQUACROP, FASSET, HERMES and CROPSYST) mostly showed similar trends in simulated grain yields for the different weather scenarios, it was obvious that heat and drought stress caused by changes in temperature and/or precipitation for a short period of 2 weeks resulted in different grain yields simulated by different models. The present study also revealed that the models responded differently to changes in soil tillage practices, which affected soil water storage capacity.
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Perego, A., Giussani, A., Fumagalli, M., Sanna, M., Chiodini, M., Carozzi, M., et al. (2013). Crop rotation, fertilizer types and application timing affecting nitrogen leaching in nitrate vulnerable zones in Po Valley. Italian Journal of Agrometeorology, 3(2), 39–50.
Abstract: A critical analysis was performed to evaluate the potential risk of nitrate leaching towards groundwater in three Nitrate Vulnerable Zones (NVZs) of the Lombardia plain by applying the ARMOSA crop simulation model over a 20 years period (1988-2007). Each studied area was characterized by (i) two representative soil types, (ii) a meteorological data set, (iii) four crop rotations according to the regional land use, (iv) organic N load, calculated on the basis of livestock density. We simulated 3 scenarios defined by different fertilization time and amount of mineral and organic fertilizers. The A scenario involved no limitation in organic N application, while under the B and C scenarios the N organic amount was 170 and 250 kg N ha(-1)y(-1), respectively. The C scenario was compliant with the requirement of the 2012 Italian derogation, allowing only the use of organic manure with an efficiency greater than 65%. The model results highlighted that nitrate leaching was significantly reduced passing from the A scenario to the B and C ones (p<0.01); on average nitrogen losses decreased by up to 53% from A to B and up to 75% from A to C.
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Perego, A., Giussani, A., Sanna, M., Fumagalli, M., Carozzi, M., Alfieri, L., et al. (2013). The ARMOSA simulation crop model: overall features, calibration and validation results. Italian Journal of Agrometeorology, 3, 23–38.
Abstract: ARMOSA is a dynamic simulation model which was developed to simulate crop growth and development, water and nitrogen dynamics under different pedoclimatic conditions and cropping systems in the arable land. The model is meant to be a tool for the evaluation of the impact of different crop management practices on soil nitrogen and carbon cycles and groundwater nitrate pollution. A large data set collected over three to six years from six monitoring sites in Lombardia plain was used to calibrate and validate the model parameters. Measured meteorological data, soil chemical and physical characterizations, crop-related data of different cropping systems allowed for a proper parameterization. Fit indexes showed the reliability of the model in adequately predicting crop-related variables, such as above ground biomass (RRMSE=11.18, EF=0.94, r=0.97), Leaf Area Index maximum value (RRMSE=8.24, EF=0.37, r=0.72), harvest index (RRMSE=19.4, EF=0.32, r=0.74), and crop N uptake (RRMSE=20.25, EF=0.69, r=0.85). Using two different one-year data set from each monitoring site, the model was calibrated and validated, getting to encouraging results: RRMSE=6.28, EF=0.52, r=0.68 for soil water content at different depths, and RRMSE=34.89, EF=0.59, r=0.75 for soil NO3-N content along soil profile. The simulated N leaching was in full agreement with measured data (RRMSE=26.62, EF=0.88, r=0.98).
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Tao, F., Roetter, R. P., Palosuo, T., Hernandez Diaz-Ambrona, C. G., Ines Minguez, M., Semenov, M. A., et al. (2018). Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Glob. Chang. Biol., 24(3), 1291–1307.
Abstract: Climate change impact assessments are plagued with uncertainties from many sources, such as climate projections or the inadequacies in structure and parameters of the impact model. Previous studies tried to account for the uncertainty from one or two of these. Here, we developed a triple-ensemble probabilistic assessment using seven crop models, multiple sets of model parameters and eight contrasting climate projections together to comprehensively account for uncertainties from these three important sources. We demonstrated the approach in assessing climate change impact on barley growth and yield at Jokioinen, Finland in the Boreal climatic zone and Lleida, Spain in the Mediterranean climatic zone, for the 2050s. We further quantified and compared the contribution of crop model structure, crop model parameters and climate projections to the total variance of ensemble output using Analysis of Variance (ANOVA). Based on the triple-ensemble probabilistic assessment, the median of simulated yield change was -4% and +16%, and the probability of decreasing yield was 63% and 31% in the 2050s, at Jokioinen and Lleida, respectively, relative to 1981-2010. The contribution of crop model structure to the total variance of ensemble output was larger than that from downscaled climate projections and model parameters. The relative contribution of crop model parameters and downscaled climate projections to the total variance of ensemble output varied greatly among the seven crop models and between the two sites. The contribution of downscaled climate projections was on average larger than that of crop model parameters. This information on the uncertainty from different sources can be quite useful for model users to decide where to put the most effort when preparing or choosing models or parameters for impact analyses. We concluded that the triple-ensemble probabilistic approach that accounts for the uncertainties from multiple important sources provide more comprehensive information for quantifying uncertainties in climate change impact assessments as compared to the conventional approaches that are deterministic or only account for the uncertainties from one or two of the uncertainty sources.
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