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Korhonen, P., Palosuo, T., Persson, T., Höglind, M., Jego, G., Van Oijen, M., et al. (2018). Modelling grass yields in northern climates – a comparison of three growth models for timothy. Field Crops Research, 224, 37–47.
Abstract: During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratertse L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil -crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development.
Keywords: Forage grass; Model comparison; Timothy; Uncertainty; Yield; Nutritive-Value; Catimo Model; Nitrogen Balances; Simulation; Regrowth; Wheat; Stics; Dynamics; Harvest; Water
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Wallach, D., Nissanka, S. P., Karunaratne, A. S., Weerakoon, W. M. W., Thorburn, P. J., Boote, K. J., et al. (2016). Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice. European Journal of Agronomy, .
Abstract: We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures.
Keywords: Uncertainty; Phenology; Parameter uncertainty; Multi-model ensemble; Generalized least squares; Rice; Crop model; APSIM; DSSAT
Area: CropM
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Doltra, J., Olesen, J. E., Báez, D., Louro, A., & Chirinda, N. (2015). Modeling nitrous oxide emissions from organic and conventional cereal-based cropping systems under different management, soil and climate factors. European Journal of Agronomy, 66, 8–20.
Abstract: Mitigation of greenhouse gas emissions from agriculture should be assessed across cropping systems and agroclimatic regions. In this study, we investigate the ability of the FASSET model to analyze differences in the magnitude of N2O emissions due to soil, climate and management factors in cereal-based cropping systems. Forage maize was grown in a conventional dairy system at Mabegondo (NW Spain) and wheat and barley in organic and conventional crop rotations at Foulum (NW Denmark). These two European sites represent agricultural areas with high and low to moderate emission levels, respectively. Field trials included plots with and without catch crops that were fertilized with either mineral N fertilizer, cattle slurry, pig slurry or digested manure. Non-fertilized treatments were also included. Measurements of N2O fluxes during the growing cycle of all the crops at both sites were performed with the static chamber method with more frequent measurements post-fertilization and biweekly measurements when high fluxes were not expected. All cropping systems were simulated with the FASSET version 2.5 simulation model. Cumulative soil seasonal N2O emissions were about ten-fold higher at Mabegondo than at Foulum when averaged across systems and treatments (8.99 and 0.71 kg N2O-N ha(-1), respectively). The average simulated cumulative soil N2O emissions were 9.03 and 1.71 kg N2O-N ha(-1) at Mabegondo and at Foulum, respectively. Fertilization, catch crops and cropping systems had lower influence on the seasonal soil N2O fluxes than the environmental factors. Overall, in its current version FASSET reproduced the effects of the different factors investigated on the cumulative seasonal soil N2O emissions but temporally it overestimated emissions from nitrification and denitrification on particular days when soil operations, ploughing or fertilization, took place. The errors associated with simulated daily soil N2O fluxes increased with the magnitude of the emissions. For resolving causes of differences in simulated and measured fluxes more intensive and temporally detailed measurements of N2O fluxes and soil C and N dynamics would be needed. (C) 2015 Elsevier B.V. All rights reserved.
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Angulo, C., Gaiser, T., Rötter, R. P., Børgesen, C. D., Hlavinka, P., Trnka, M., et al. (2014). ‘Fingerprints’ of four crop models as affected by soil input data aggregation. European Journal of Agronomy, 61, 35–48.
Abstract: • Systematic analysis of the influence of spatial soil data resolution on simulated regional yields and total growing season evapotranspiration. • The responses of four crop models of different complexity are compared. • Differences between models are larger than the effect of the chosen spatial soil data resolution. • Low influence of soil data resolution due to: high precipitation amount, methods for calculating water retention and method of data aggregation. The spatial variability of soil properties is an important driver of yield variability at both field and regional scale. Thus, when using crop growth simulation models, the choice of spatial resolution of soil input data might be key in order to accurately reproduce observed yield variability. In this study we used four crop models (SIMPLACE<LINTUL-SLIM>, DSSAT-CSM, EPIC and DAISY) differing in the detail of modeling above-ground biomass and yield as well as of modeling soil water dynamics, water uptake and drought effects on plants to simulate winter wheat in two (agro-climatologically and geo-morphologically) contrasting regions of the federal state of North-Rhine-Westphalia (Germany) for the period from 1995 to 2008. Three spatial resolutions of soil input data were taken into consideration, corresponding to the following map scales: 1:50 000, 1:300 000 and 1:1 000 000. The four crop models were run for water-limited production conditions and model results were evaluated in the form of frequency distributions, depicted by bean-plots. In both regions, soil data aggregation had very small influence on the shape and range of frequency distributions of simulated yield and simulated total growing season evapotranspiration for all models. Further analysis revealed that the small influence of spatial resolution of soil input data might be related to: (a) the high precipitation amount in the region which partly masked differences in soil characteristics for water holding capacity, (b) the loss of variability in hydraulic soil properties due to the methods applied to calculate water retention properties of the used soil profiles, and (c) the method of soil data aggregation. No characteristic “fingerprint” between sites, years and resolutions could be found for any of the models. Our results support earlier recommendation to evaluate model results on the basis of frequency distributions since these offer quick and better insight into the distribution of simulation results as compared to summary statistics only. Finally, our results support conclusions from other studies about the usefulness of considering a multi-model approach to quantify the uncertainty in simulated yields introduced by the crop growth simulation approach when exploring the effects of scaling for regional yield impact assessments.
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Zhang, S., Tao, F., & Zhang, Z. (2017). Uncertainty from model structure is larger than that from model parameters in simulating rice phenology in China. Europ. J. Agron., 87, 30–39.
Abstract: Rice models have been widely used in simulating and predicting rice phenology in contrasting climate zones, however the uncertainties from model structure (different equations or models) and/or model parameters were rarely investigated. Here, five rice phenological models/modules (Le., CERES-Rice, ORYZA2000, RCM, Beta Model and SIMRIW) were applied to simulate rice phenology at 23 experimental stations from 1992 to 2009 in two major rice cultivation regions of China: the northeastern China and the southwestern China. To investigate the uncertainties from model biophysical parameters, each model was run with randomly perturbed 50 sets of parameters. The results showed that the median of ensemble simulations were better than the simulation by most models. Models couldn’t simulate well in some specific years despite of parameters optimization, suggesting model structure limit model performance in some cases. The models adopting accumulative thermal time function (e.g., CERES-Rice and ORYZA2000) had better performance in the southwestern China, in contrast, those adopting exponential function (e.g., Beta model and RCM model) had better performance in the northeastern China. In northeastern China, the contribution of model structure and model parameters to model total variance was, respectively, about 55.90% and 44.10% in simulating heading date, and about 75.43% and 24.57% in simulating maturity date. In the southwestern China, the contribution of model structure and model parameters to model total variance was, respectively, about 79.97% and 27.03% in simulating heading date, about 92.15% and 7.85% in simulating maturity date. Uncertainty from model structure was the most relevant source. The results highlight that the temperature response functions of rice development rate under extreme climate conditions should be improved based on environment-controlled experimental data.
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