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Sanna, M., Bellocchi, G., Fumagalli, M., & Acutis, M. (2015). A new method for analysing the interrelationship between performance indicators with an application to agrometeorological models. Env. Model. Softw., 73, 286–304.
Abstract: The use of a variety of metrics is advocated to assess model performance but correlated metrics may convey the same information, thus leading to redundancy. Starting from this assumption, a method was developed for selecting, from among a collection of performance indicators, one or more subsets providing the same information as the entire set. The method, based on the definition of “stable correlation”, was applied to 23 performance indicators of agrometeorological models, calculated on large sets of simulated and observed data of four agronomic and meteorological variables: above-ground biomass, leaf area index, hourly air relative humidity and daily solar radiation. Two subsets were determined: {Squared Bias, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index, Modified Modelling Efficiency}, {Persistence Model Efficiency, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index}. The method needs corroboration but is statistically founded and can support the implementation of standardized evaluation tools. (C) 2015 Elsevier Ltd. All rights reserved.
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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Webber, H., Martre, P., Asseng, S., Kimball, B., White, J., Ottman, M., et al. (2017). Canopy temperature for simulation of heat stress in irrigated wheat in a semi-arid environment: A multi-model comparison. Field Crops Research, 202, 21–35.
Abstract: Even brief periods of high temperatures occurring around flowering and during grain filling can severely reduce grain yield in cereals. Recently, ecophysiological and crop models have begun to represent such phenomena. Most models use air temperature (Tair) in their heat stress responses despite evidence that crop canopy temperature (Tc) better explains grain yield losses. Tc can deviate significantly from Tair based on climatic factors and the crop water status. The broad objective of this study was to evaluate whether simulation of Tc improves the ability of crop models to simulate heat stress impacts on wheat under irrigated conditions. Nine process-based models, each using one of three broad approaches (empirical, EMP; energy balance assuming neutral atmospheric stability, EBN; and energy balance correcting for the atmospheric stability conditions, EBSC) to simulate Tc, simulated grain yield under a range of temperature conditions. The models varied widely in their ability to reproduce the measured Tc with the commonly used EBN models performing much worse than either EMP or EBSC. Use of Tc to account for heat stress effects did improve simulations compared to using only Tair to a relatively minor extent, but the models that additionally use Tc on various other processes as well did not have better yield simulations. Models that simulated yield well under heat stress had varying skill in simulating Tc. For example, the EBN models had very poor simulations of Tc but performed very well in simulating grain yield. These results highlight the need to more systematically understand and model heat stress events in wheat.
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Toscano, P., Genesio, L., Crisci, A., Vaccari, F. P., Ferrari, E., La Cava, P., et al. (2015). Empirical modelling of regional and national durum wheat quality. Agricultural and Forest Meteorology, 204, 67–78.
Abstract: The production of durum wheat in the Mediterranean basin is expected to experience increased variability in yield and quality as a consequence of climate change. To assess how environmental variables and agronomic practices affect grain protein content (GPC), a novel approach based on monthly gridded input data has been implemented to develop empirical model, and validated on historical time series to assess its capability to reproduce observed spatial and inter-annual GPC variability. The model was applied in four Italian regions and at the whole national scale and proved reliable and usable for operational purposes also in a forecast ‘real-time’ mode before harvesting. Precipitable water during autumn to winter and air temperature from anthesis to harvest were extremely important influences on GPC; these and additional variables, included in a linear model, were able to account for 95% of the variability in GPC that has occurred in the last 15 years in Italy. Our results are a unique example of the use of modelling as a predictive real-time platform and are a useful tool to understand better and forecast the impacts of future climate change projections on durum wheat production and quality.
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Rötter, R. P., Tao, F., Höhn, J. G., & Palosuo, T. (2015). Use of crop simulation modelling to aid ideotype design of future cereal cultivars. J. Experim. Bot., 66(12), 3463–3476.
Abstract: A major challenge of the 21st century is to achieve food supply security under a changing climate and roughly a doubling in food demand by 2050 compared to present, the majority of which needs to be met by the cereals wheat, rice, maize, and barley. Future harvests are expected to be especially threatened through increased frequency and severity of extreme events, such as heat waves and drought, that pose particular challenges to plant breeders and crop scientists. Process-based crop models developed for simulating interactions between genotype, environment, and management are widely applied to assess impacts of environmental change on crop yield potentials, phenology, water use, etc. During the last decades, crop simulation has become important for supporting plant breeding, in particular in designing ideotypes, i.e. ‘model plants’, for different crops and cultivation environments. In this review we (i) examine the main limitations of crop simulation modelling for supporting ideotype breeding, (ii) describe developments in cultivar traits in response to climate variations, and (iii) present examples of how crop simulation has supported evaluation and design of cereal cultivars for future conditions. An early success story for rice demonstrates the potential of crop simulation modelling for ideotype breeding. Combining conventional crop simulation with new breeding methods and genetic modelling holds promise to accelerate delivery of future cereal cultivars for different environments. Robustness of model-aided ideotype design can further be enhanced through continued improvements of simulation models to better capture effects of extremes and the use of multi-model ensembles.
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