| Records |
| Author |
Van Oijen, M.; Höglind, M. |
| Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
| Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
| Volume |
207 |
Issue |
3 |
Pages |
627-643 |
| Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
| Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
| Address |
2016-10-31 |
| Corporate Author |
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| Language |
English |
Summary Language |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0014-2336 |
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Article |
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Conference |
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Notes  |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4820 |
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| Author |
Quain, M.D.; Makgopa, M.E.; Marquez-Garcia, B.; Comadira, G.; Fernandez-Garcia, N.; Olmos, E.; Schnaubelt, D.; Kunert, K.J.; Foyer, C.H. |
| Title |
Ectopic phytocystatin expression leads to enhanced drought stress tolerance in soybean (Glycine max) and Arabidopsis thaliana through effects on strigolactone pathways and can also result in improved seed traits |
Type |
Journal Article |
| Year |
2014 |
Publication |
Plant Biotechnology Journal |
Abbreviated Journal |
Plant Biotechnol. J. |
| Volume |
12 |
Issue |
7 |
Pages |
903-913 |
| Keywords |
Arabidopsis/*genetics/metabolism/physiology; Carbon Dioxide/metabolism; Chlorophyll/metabolism; Cystatins/*genetics/metabolism/physiology; Droughts; Lactones/*metabolism; Oryza/genetics; Phenotype; Plant Proteins/*genetics/metabolism/physiology; Seeds/genetics/metabolism/physiology; Soybeans/*genetics/metabolism/physiology; Stress, Physiological/*genetics; cystatin; cysteine protease; drought tolerance; photosynthesis; seed protein and yield; strigolactone |
| Abstract |
Ectopic cystatin expression has long been used in plant pest management, but the cysteine protease, targets of these inhibitors, might also have important functions in the control of plant lifespan and stress tolerance that remain poorly characterized. We therefore characterized the effects of expression of the rice cystatin, oryzacystatin-I (OCI), on the growth, development and stress tolerance of crop (soybean) and model (Arabidopsis thaliana) plants. Ectopic OCI expression in soybean enhanced shoot branching and leaf chlorophyll accumulation at later stages of vegetative development and enhanced seed protein contents and decreased the abundance of mRNAs encoding strigolactone synthesis enzymes. The OCI-expressing A. thaliana showed a slow-growth phenotype, with increased leaf numbers and enhanced shoot branching at flowering. The OCI-dependent inhibition of cysteine proteases enhanced drought tolerance in soybean and A. thaliana, photosynthetic CO2 assimilation being much less sensitive to drought-induced inhibition in the OCI-expressing soybean lines. Ectopic OCI expression or treatment with the cysteine protease inhibitor E64 increased lateral root densities in A. thaliana. E64 treatment also increased lateral root densities in the max2-1 mutants that are defective in strigolactone signalling, but not in the max3-9 mutants that are defective in strigolactone synthesis. Taken together, these data provide evidence that OCI-inhibited cysteine proteases participate in the control of growth and stress tolerance through effects on strigolactones. We conclude that cysteine proteases are important targets for manipulation of plant growth, development and stress tolerance, and also seed quality traits. |
| Address |
2016-06-01 |
| Corporate Author |
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| Language |
English |
Summary Language |
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Series Issue |
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Edition |
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| ISSN |
1467-7644 |
ISBN |
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Article |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4740 |
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| Author |
Palosuo, T.; Rotter, R.P.; Salo, T.; Peltonen-Sainio, P.; Tao, F.; Lehtonen, H. |
| Title |
Effects of climate and historical adaptation measures on barley yield trends in Finland |
Type |
Journal Article |
| Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
| Volume |
65 |
Issue |
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Pages |
221-236 |
| Keywords |
adaptation; climate; crop simulation modelling; plant breeding; spring barley; yield gap; crop production; spring barley; quantitative-evaluation; european conditions; cereal cultivars; growing-season; use efficiency; field crops; wheat; northern |
| Abstract |
In this study, the WOFOST crop simulation model was used together with comprehensive empirical databases on barley Hordeum vulgare L. to study the contributions of different yield-determining and -limiting factors to observed trends of barley yield in Finland from 1988 to 2008. Simulations were performed at 3 study sites representing different agro-ecological zones, and compared with the data from experimental sites and that reported by local farmers. Yield gaps between simulated potential yields and farmers’ yields and their trends were assessed. Positive observed yield trends of Finnish barley mostly resulted from the development and usage of new, high-yielding cultivars. Simulated trends in climatic potential and water-limited potential yields of individual cultivars showed a slight declining trend. Yield gaps showed an increasing trend in 2 out of 3 study areas. Since the mid-1990s, a major reason for this has been the lack of market and policy incentives favouring crop management decisions, i.e. annual fertilisation, soil maintenance, drainage and crop rotation decisions, aiming for higher yields. The study indicates potential options for increasing or maintaining barley yields in the future. The breeding of new climate-resilient cultivars is the primary option. However, this needs to work alongside overall adjustments to farm management and must be supported by financial incentives for farmers to increase yields. |
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| Language |
English |
Summary Language |
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Original Title |
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| Series Editor |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0936-577x |
ISBN |
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Article |
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Expedition |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4700 |
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| Author |
Schauberger, B.; Rolinski, S.; Müller, C. |
| Title |
A network-based approach for semi-quantitative knowledge mining and its application to yield variability |
Type |
Journal Article |
| Year |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
| Volume |
11 |
Issue |
12 |
Pages |
123001 |
| Keywords |
yield variability; crop models; interaction network; plant process; wheat; maize; rice; Global Food Security; Climate-Change; Crop Production; Stress Tolerance; Wheat Yields; Heat-Stress; Temperature Variability; Environmental-Factors; United-States; Elevated CO2 |
| Abstract |
Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields. |
| Address |
2017-04-07 |
| Corporate Author |
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Thesis |
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| Language |
English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
1748-9326 |
ISBN |
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Medium |
Review |
| Area |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4942 |
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| Author |
Lizaso, J.I.; Ruiz-Ramos, M.; Rodriguez, L.; Gabaldon-Leal, C.; Oliveira, J.A.; Lorite, I.J.; Rodriguez, A.; Maddonni, G.A.; Otegui, M.E. |
| Title |
Modeling the response of maize phenology, kernel set, and yield components to heat stress and heat shock with CSM-IXIM |
Type |
Journal Article |
| Year |
2017 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
| Volume |
214 |
Issue |
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Pages |
239-252 |
| Keywords |
Heat stress, Maize; CSM-IXIM; CSM-CERES-maize; Beta function; CERES-MAIZE; DEVELOPMENTAL PROCESSES; TEMPERATURE RESPONSES; CROSS-VALIDATION; GRAIN-SORGHUM; GROWTH; SIMULATION; PLANTS; SENESCENCE; NITROGEN |
| Abstract |
The available evidence suggests that the current increasing trend in global surface temperatures will continue during this century, which will be accompanied by a greater frequency of extreme events. The IPCC has projected that higher temperatures may outscore the known optimal and maximum temperatures for maize. The purpose of this study was to improve the ability of the maize model CSM-IXIM to simulate crop development, growth, and yield under hot conditions, especially with regards to the impact of above-optimal temperatures around anthesis. Field and greenhouse experiments that were performed over three years (2014-2016) using the same short-season hybrid, PR37N01 (FAO 300), provided the data for this work. Maize was sown at a target population density of 5 plants M-2 on two sowing dates in 2014 and 2015 and on one in 2016 at three locations in Spain (northern, central, and southern Spain) with a well-defined thermal gradient. The same hybrid was also sown in two greenhouse chambers with daytime target temperatures of approximately 25 and above 35 degrees C. During the nighttime, the temperature in both chambers was allowed to equilibrate with the outside temperature. The greenhouse treatments consisted of moving 18 plants at selected phenological stages (V4, V9, anthesis, lag phase, early grain filling) from the cool chamber to the hot chamber over a week and then returning the plants back to the cool chamber. An additional control treatment remained in the cool chamber all season, and in 2015 and 2016, one treatment remained permanently in the hot chamber. Two maize models in the Decision Support System for Agrotechnology Transfer (DSSAT) V4.6 were compared, namely CERES and IXIM. The HUM version included additional components that were previously developed to improve the crop N simulation and to incorporate the anthesis-silking interval (ASI). A new thermal time calculation, a heat stress index, the impact of pollen-sterilizing temperatures, and the explicit simulation of male and female flowering as affected by the daily heat conditions were added to IXIM. The phenology simulation in field experiments by IXIM improved substantially. The RMSE for silking and maturity in CERES were 7.9 and 13.7 days, decreasing in DCIM to 2.8 and 7.3 days, respectively. Similarly, the estimated kernel numbers, kernel weight, grain yield and final biomass were always closer to the measurements in HUM than in CERES. The worst simulations were for kernel weight, and for that reason, the differences in grain yield between the models were small (the RMSE in CERES was 1219 kg ha(-1) vs. 1082 kg ha(-1) in IXIM). The greenhouse results also supported the improved estimations of crop development by IXIM (RMSE of 2.6 days) relative to CERES (7.4 days). The impact of the heat treatments on grain yield was consistently overestimated by CERES, while HUM captured the general trend. The new HUM model improved the CERES simulations when elevated temperatures were included in the evaluation data. Additional model testing with measurements from a wider latitudinal range and relevant heat conditions are required. |
| Address |
2017-11-24 |
| Corporate Author |
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Thesis |
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Place of Publication |
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Editor |
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English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0378-4290 |
ISBN |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5180 |
| Permanent link to this record |
