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Stefańczyk, E.; Sobkowiak, S.; Brylińska, M.; Śliwka, J. |
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Title |
Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland |
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Journal Article |
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Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
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Keywords |
ITS; mycotoxin; pathogenicity; Solanum tuberosum; tef-1α; β-tubulin; sequence data; Trichothecenes; identification; fungus; pathogenicity; temperature; sensitivity; zearalenone; strains; disease |
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Abstract |
Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes. |
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0929-1873 1573-8469 |
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CropM, ft_macsur |
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MA @ admin @ |
Serial |
4721 |
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Author |
Conradt, T.; Gornott, C.; Wechsung, F. |
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Title |
Extending and improving regionalized winter wheat and silage maize yield regression models for Germany: Enhancing the predictive skill by panel definition through cluster analysis |
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Journal Article |
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Year |
2016 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
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Volume |
216 |
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Pages |
68-81 |
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Keywords |
cluster analysis; crop yield estimation; germany; multivariate regression; silage maize; winter wheat; climate-change; canadian prairies; crop yield; temperature; responses; environments; variability; cultivar; china |
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Abstract |
Regional agricultural yield assessments allowing for weather effect quantifications are a valuable basis for deriving scenarios of climate change effects and developing adaptation strategies. Assessing weather effects by statistical methods is a classical approach, but for obtaining robust results many details deserve attention and require individual decisions as is demonstrated in this paper. We evaluated regression models for annual yield changes of winter wheat and silage maize in more than 300 German counties and revised them to increase their predictive power. A major effort of this study was, however, aggregating separately estimated time series models (STSM) into panel data models (PDM) based on cluster analyses. The cluster analyses were based on the per-county estimates of STSM parameters. The original STSM formulations (adopted from a parallel study) contained also the non-meteorological input variables acreage and fertilizer price. The models were revised to use only weather variables as estimation basis. These consisted of time aggregates of radiation, precipitation, temperature, and potential evapotranspiration. Altering the input variables generally increased the predictive power of the models as did their clustering into PDM. For each crop, five alternative clusterings were produced by three different methods, and similarities between their spatial structures seem to confirm the existence of objective clusters about common model parameters. Observed smooth transitions of STSM parameter values in space suggest, however, spatial autocorrelation effects that could also be modeled explicitly. Both clustering and autocorrelation approaches can effectively reduce the noise in parameter estimation through targeted aggregation of input data. (C) 2015 Elsevier B.V. All rights reserved. |
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0168-1923 |
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CropM, ft_macsur |
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MA @ admin @ |
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4709 |
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Author |
Semenov, M.A.; Stratonovitch, P. |
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Title |
Adapting wheat ideotypes for climate change: accounting for uncertainties in CMIP5 climate projections |
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Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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65 |
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123-139 |
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Keywords |
sirius wheat model; lars-wg weather generator; downscaling; cmip5 ensemble; impact assessment; stochastic weather generators; earth system model; diverse canadian climates; high-temperature stress; change scenarios; lars-wg; decadal prediction; yield progress; heat-stress; aafc-wg |
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This study describes integration of climate change projections from the Coupled Model Intercomparison Project Phase 5 (CMIP5) multi-model ensemble with the LARS-WG weather generator, which delivers an attractive option for the downscaling of large-scale climate projections from global climate models (GCMs) to local-scale climate scenarios for impact assessments. A subset of 18 GCMs from the CMIP5 ensemble and 2 Representative Concentration Pathways (RCPs), RCP4.5 and RCP8.5, were integrated with LARS-WG. For computationally demanding impact assessments, where it is not practical to explore all possible combinations of GCM x RCP, a climate sensitivity index could be used to select a subset of GCMs which preserves the range of uncertainty found in CMIP5. This would allow us to quantify uncertainty in predictions of impacts resulting fromthe CMIP5 ensemble by conducting fewer simulation experiments. In a case study, we describe the use of the Sirius wheat simulation model to design in silico wheat ideotypes that are optimised for future climates in Europe, sampling uncertainty in GCMs, emission scenarios, time periods and European locations with contrasting climates. Two contrasting GCMs were selected for the analysis, ‘hot’ HadGEM2-ES and ‘cool’ GISS-E2-R-CC. Despite large uncertainty in future climate projections, we were able to identify target traits for wheat improvement which may assist breeding for high-yielding wheat cultivars with increased yield stability. |
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2015-10-12 |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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MA @ admin @ |
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4701 |
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Baranowski, P.; Krzyszczak, J.; Slawinski, C.; Hoffmann, H.; Kozyra, J.; Nieróbca, A.; Siwek, K.; Gluza, A. |
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Title |
Multifractal analysis of meteorological time series to assess climate impacts |
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Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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Volume |
65 |
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39-52 |
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Keywords |
multifractal analysis; time series; agro-meteorological parameters; detrended fluctuation analysis; daily temperature records; catalonia ne spain; fractal analysis; river-basin; precipitation; variability; patterns; trends; china |
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Agro-meteorological quantities are often in the form of time series, and knowledge about their temporal scaling properties is fundamental for transferring locally measured fluctuations to larger scales and vice versa. However, the scaling analysis of these quantities is complicated due to the presence of localized trends and nonstationarities. The objective of this study was to characterise scaling properties (i.e. statistical self-similarity) of the chosen agro-meteorological quantities through multifractal detrended fluctuation analysis (MFDFA). For this purpose, MFDFA was performedwith 11 322 measured time series (31 yr) of daily air temperature, wind velocity, relative air humidity, global radiation and precipitation from stations located in Finland, Germany, Poland and Spain. The empirical singularity spectra indicated their multifractal structure. The richness of the studied multifractals was evaluated by the width of their spectrum, indicating considerable differences in dynamics and development. In log-log plots of the cumulative distributions of all meteorological parameters the linear functions prevailed for high values of the response, indicating that these distributions were consistent with power-law asymptotic behaviour. Additionally, we investigated the type of multifractality that underlies the q-dependence of the generalized Hurst exponent by analysing the corresponding shuffled and surrogate time series. For most of the studied meteorological parameters, the multifractality is due to different long-range correlations for small and large fluctuations. Only for precipitation does the multifractality result mainly from broad probability function. This feature may be especially valuable for assessing the effect of change in climate dynamics. |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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MA @ admin @ |
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4666 |
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Author |
Lipiec, J.; Doussan, C.; Nosalewicz, A.; Kondracka, K. |
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Title |
Effect of drought and heat stresses on plant growth and yield: a review |
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Journal Article |
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2013 |
Publication |
International Agrophysics |
Abbreviated Journal |
International Agrophysics |
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27 |
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4 |
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463-477 |
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Keywords |
water stress; high temperature; root and shoot; growth; tolerance mechanisms; management practices; water-use efficiency; soil physical-properties; abscisic-acid; high-temperature; root systems; hydraulic architecture; conservation tillage; photosystem-ii; l. genotypes; drying soil |
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Drought and heat stresses are important threat limitations to plant growth and sustainable agriculture worldwide. Our objective is to provide a review of plant responses and adaptations to drought and elevated temperature including roots, shoots, and final yield and management approaches for alleviating adverse effects of the stresses based mostly on recent literature. The sections of the paper deal with plant responses including root growth, transpiration, photosynthesis, water use efficiency, phenotypic flexibility, accumulation of compounds of low molecular mass (eg proline and gibberellins), and expression of some genes and proteins for increasing the tolerance to the abiotic stresses. Soil and crop management practices to alleviate negative effects of drought and heat stresses are also discussed. Investigations involving determination of plant assimilate partitioning, phenotypic plasticity, and identification of most stress- tolerant plant genotypes are essential for understanding the complexity of the responses and for future plant breeding. The adverse effects of drought and heat stress can be mitigated by soil management practices, crop establishment, and foliar application of growth regulators by maintaining an appropriate level of water in the leaves due to osmotic adjustment and stomatal performance. |
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0236-8722 |
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Review |
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CropM, ft_macsur |
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MA @ admin @ |
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4608 |
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