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Author |
Schauberger, B.; Rolinski, S.; Müller, C. |
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Title |
A network-based approach for semi-quantitative knowledge mining and its application to yield variability |
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Journal Article |
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Year |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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Volume |
11 |
Issue |
12 |
Pages |
123001 |
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Keywords |
yield variability; crop models; interaction network; plant process; wheat; maize; rice; Global Food Security; Climate-Change; Crop Production; Stress Tolerance; Wheat Yields; Heat-Stress; Temperature Variability; Environmental-Factors; United-States; Elevated CO2 |
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Abstract |
Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields. |
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2017-04-07 |
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English |
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ISSN |
1748-9326 |
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Review |
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CropM, ft_macsur |
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no |
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Call Number |
MA @ admin @ |
Serial |
4942 |
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Author |
Lizaso, J.I.; Ruiz-Ramos, M.; Rodriguez, L.; Gabaldon-Leal, C.; Oliveira, J.A.; Lorite, I.J.; Rodriguez, A.; Maddonni, G.A.; Otegui, M.E. |
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Title |
Modeling the response of maize phenology, kernel set, and yield components to heat stress and heat shock with CSM-IXIM |
Type |
Journal Article |
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Year |
2017 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
214 |
Issue |
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Pages |
239-252 |
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Keywords |
Heat stress, Maize; CSM-IXIM; CSM-CERES-maize; Beta function; CERES-MAIZE; DEVELOPMENTAL PROCESSES; TEMPERATURE RESPONSES; CROSS-VALIDATION; GRAIN-SORGHUM; GROWTH; SIMULATION; PLANTS; SENESCENCE; NITROGEN |
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Abstract |
The available evidence suggests that the current increasing trend in global surface temperatures will continue during this century, which will be accompanied by a greater frequency of extreme events. The IPCC has projected that higher temperatures may outscore the known optimal and maximum temperatures for maize. The purpose of this study was to improve the ability of the maize model CSM-IXIM to simulate crop development, growth, and yield under hot conditions, especially with regards to the impact of above-optimal temperatures around anthesis. Field and greenhouse experiments that were performed over three years (2014-2016) using the same short-season hybrid, PR37N01 (FAO 300), provided the data for this work. Maize was sown at a target population density of 5 plants M-2 on two sowing dates in 2014 and 2015 and on one in 2016 at three locations in Spain (northern, central, and southern Spain) with a well-defined thermal gradient. The same hybrid was also sown in two greenhouse chambers with daytime target temperatures of approximately 25 and above 35 degrees C. During the nighttime, the temperature in both chambers was allowed to equilibrate with the outside temperature. The greenhouse treatments consisted of moving 18 plants at selected phenological stages (V4, V9, anthesis, lag phase, early grain filling) from the cool chamber to the hot chamber over a week and then returning the plants back to the cool chamber. An additional control treatment remained in the cool chamber all season, and in 2015 and 2016, one treatment remained permanently in the hot chamber. Two maize models in the Decision Support System for Agrotechnology Transfer (DSSAT) V4.6 were compared, namely CERES and IXIM. The HUM version included additional components that were previously developed to improve the crop N simulation and to incorporate the anthesis-silking interval (ASI). A new thermal time calculation, a heat stress index, the impact of pollen-sterilizing temperatures, and the explicit simulation of male and female flowering as affected by the daily heat conditions were added to IXIM. The phenology simulation in field experiments by IXIM improved substantially. The RMSE for silking and maturity in CERES were 7.9 and 13.7 days, decreasing in DCIM to 2.8 and 7.3 days, respectively. Similarly, the estimated kernel numbers, kernel weight, grain yield and final biomass were always closer to the measurements in HUM than in CERES. The worst simulations were for kernel weight, and for that reason, the differences in grain yield between the models were small (the RMSE in CERES was 1219 kg ha(-1) vs. 1082 kg ha(-1) in IXIM). The greenhouse results also supported the improved estimations of crop development by IXIM (RMSE of 2.6 days) relative to CERES (7.4 days). The impact of the heat treatments on grain yield was consistently overestimated by CERES, while HUM captured the general trend. The new HUM model improved the CERES simulations when elevated temperatures were included in the evaluation data. Additional model testing with measurements from a wider latitudinal range and relevant heat conditions are required. |
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2017-11-24 |
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0378-4290 |
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Notes |
CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5180 |
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Author |
Lizaso, J.I.; Ruiz-Rarnos, M.; Rodriguez, L.; Gabaldon-Leal, C.; Oliveira, J.A.; Lorite, I.J.; Sanchez, D.; Garcia, E.; Rodriguez, A. |
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Title |
Impact of high temperatures in maize: Phenology and yield components |
Type |
Journal Article |
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Year |
2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
216 |
Issue |
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Pages |
129-140 |
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Keywords |
Heat stress; Maize; Kernel number; Anthesis, Beta function; Vapor-Pressure Deficit; Heat-Stress; Transpiration Response; Pollen; Viability; Leaf Appearance; Climate-Change; Kernel Number; Grain-Yield; Growth; Plants |
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Abstract |
Heat stress is a main threat to current and future global maize production. Adaptation of maize to future warmer conditions requires improving our understanding of crop responses to elevated temperatures. For this purpose, the same short-season (FAO 300) maize hybrid PR37N01 was grown over three years of field experiments on three contrasting Spanish locations in terms of temperature regime. The information complemented three years of greenhouse experiments with the same hybrid, applying heat treatments at various critical moments of the crop cycle. Crop phenology, growth, grain yield, and yield components were monitored. An optimized beta function improved the calculation of thermal time compared to the linear-cutoff estimator with base and optimum temperatures of 8 and 34 degrees C, respectively. Our results showed that warmer temperatures accelerate development rate resulting in shorter vegetative and reproductive phases (ca. 30 days for the whole cycle). Heat stress did not cause silking delay in relation to anthesis (extended anthesis-silking interval), at least in the range of temperatures (maximum temperature up to 42.9 degrees C in the field and up to 52.5 degrees C in the greenhouse) considered in this study. Our results indicated that maize grain yield is reduced under heat stress mainly via pollen viability that in turn determines kernel number, although a smaller but significant effect of the female component has been also detected. |
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2018-02-19 |
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English |
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0378-4290 |
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Notes |
CropM, ft_macsur |
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no |
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Call Number |
MA @ admin @ |
Serial |
5190 |
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Author |
Ventrella, D.; Charfeddine, M.; Giglio, L.; Castellini, M. |
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Title |
Application of DSSAT models for an agronomic adaptation strategy under climate change in Southern of Italy: optimum sowing and transplanting time for winter durum wheat and tomato |
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Journal Article |
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Year |
2012 |
Publication |
Italian Journal of Agronomy |
Abbreviated Journal |
Ital. J. Agron. |
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Volume |
7 |
Issue |
1 |
Pages |
16 |
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Keywords |
DSSAT model; climate change; winter durum wheat; tomato; sowing time; transplanting time |
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Abstract |
Many climate change studies have been carried out in different parts of the world to assess climate change vulnerability and adaptation capacity of agricultural crops for certain environments characterized from climatic, pedological and agronomical point of view. The objective of this study was to analyse the productive response of winter durum wheat and tomato to climate change and sowing/transplanting time in one of the most productive areas of Italy (i.e. Capitanata, Puglia), using CERES-Wheat and CROPGRO cropping system models. Three climatic datasets were used: i) a single dataset (50 km x 50 km) provided by the JRC European centre for the period 1975- 2005; two datasets from HadCM3 for the IPCC A2 GHG scenario for time slices with +2°C (centred over 2030-2060) and +5°C (centred over 2070-2099), respectively. All three datasets were used to generate synthetic climate series using a weather simulator (model LARS-WG). No negative yield effects of climate change were observed for winter durum wheat with delayed sowing (from 330 to 345 DOY) increasing the average dry matter grain yield under forecasted scenarios. Instead, the warmer temperatures were primarily shown to accelerate the phenology, resulting in decreased yield for tomato under the + 5°C future climate scenario. In general, under global temperature increase by 5°C, early transplanting times could minimize the negative impact of climate change on crop productivity but the intensity of this effect was not sufficient to restore the current production levels of tomato cultivated in southern Italy. |
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2016-10-31 |
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ISSN |
2039-6805 1125-4718 |
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CropM, ftnotmacsur |
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Call Number |
MA @ admin @ |
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4821 |
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Author |
Martre, P.; He, J.; Le Gouis, J.; Semenov, M.A. |
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Title |
In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management |
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Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3581-3598 |
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Keywords |
Climate; *Computer Simulation; Crops, Agricultural/*growth & development/physiology; Edible Grain/*growth & development; Models, Biological; Nitrogen/metabolism; Plant Proteins/*metabolism; Plant Transpiration; Probability; *Quantitative Trait, Heritable; Soil/chemistry; Triticum/growth & development/metabolism/*physiology; Water/chemistry; Crop growth model; genetic adaptation; grain protein concentration; grain yield; interannual variability; sensitivity analysis; wheat (Triticum aestivum L.); yield stability |
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Abstract |
Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work. |
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1460-2431 (Electronic) 0022-0957 (Linking) |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4567 |
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