| Records |
| Author |
Brylińska, M.; Sobkowiak, S.; Stefańczyk, E.; Śliwka, J. |
| Title |
Potato cultivation system affects population structure of Phytophthora infestans |
Type |
Journal Article |
| Year |
2016 |
Publication |
Fungal Ecology |
Abbreviated Journal |
Fungal Ecology |
| Volume |
20 |
Issue |
|
Pages |
132-143 |
| Keywords |
SSR; Population genetic structure; Late blight; Potato; late blight resistance; mating-type; microsatellite markers; phenotypic diversity; sexual reproduction; genotypic diversity; nordic countries; severe outbreaks; sarpo mira; pathogenicity |
| Abstract |
Phytophthora infestans is one of the most destructive potato pathogens. Many factors influence the population structure of P. infestans, including migration, climate and type of potato cultivation. Here, we analyse 365 P. infestans isolates collected from three regions of Poland over three years. We determined mating type, mitochondrial haplotype, resistance to metalaxyl, virulence and polymorphism at 14 simple sequence repeat (SSR) loci. Analysis of SSR markers showed high genetic diversity associated with this population. Model-based structure analysis grouped 299 unique genotypes into four main clusters. The P. infestans isolates collected from the Mlochow region, which has the most intensive level of potato cultivation, formed a distinct cluster, indicating a strong effect of the cultivation system on pathogen population structure. Three clusters contained isolates with frequent presence of three alleles at one locus, which may affect their capacity for sexual reproduction and preserve groups of fit genotypes that propagate asexually. (C) 2016 Elsevier Ltd and The British Mycological Society. |
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English |
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| ISSN |
1754-5048 |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4720 |
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| Author |
Makowski, D.; Asseng, S.; Ewert, F.; Bassu, S.; Durand, J.L.; Li, T.; Martre, P.; Adam, M.; Aggarwal, P.K.; Angulo, C.; Baron, C.; Basso, B.; Bertuzzi, P.; Biernath, C.; Boogaard, H.; Boote, K.J.; Bouman, B.; Bregaglio, S.; Brisson, N.; Buis, S.; Cammarano, D.; Challinor, A.J.; Confalonieri, R.; Conijn, J.G.; Corbeels, M.; Deryng, D.; De Sanctis, G.; Doltra, J.; Fumoto, T.; Gaydon, D.; Gayler, S.; Goldberg, R.; Grant, R.F.; Grassini, P.; Hatfield, J.L.; Hasegawa, T.; Heng, L.; Hoek, S.; Hooker, J.; Hunt, L.A.; Ingwersen, J.; Izaurralde, R.C.; Jongschaap, R.E.E.; Jones, J.W.; Kemanian, R.A.; Kersebaum, K.C.; Kim, S.-H.; Lizaso, J.; Marcaida, M.; Müller, C.; Nakagawa, H.; Naresh Kumar, S.; Nendel, C.; O’Leary, G.J.; Olesen, J.E.; Oriol, P.; Osborne, T.M.; Palosuo, T.; Pravia, M.V.; Priesack, E.; Ripoche, D.; Rosenzweig, C.; Ruane, A.C.; Ruget, F.; Sau, F.; Semenov, M.A.; Shcherbak, I.; Singh, B.; Singh, U.; Soo, H.K.; Steduto, P.; Stöckle, C.; Stratonovitch, P.; Streck, T.; Supit, I.; Tang, L.; Tao, F.; Teixeira, E.I.; Thorburn, P.; Timlin, D.; Travasso, M.; Rötter, R.P.; Waha, K.; Wallach, D.; White, J.W.; Wilkens, P.; Williams, J.R.; Wolf, J.; Yin, X.; Yoshida, H.; Zhang, Z.; Zhu, Y. |
| Title |
A statistical analysis of three ensembles of crop model responses to temperature and CO2 concentration |
Type |
Journal Article |
| Year |
2015 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
| Volume |
214-215 |
Issue |
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Pages |
483-493 |
| Keywords |
climate change; crop model; emulator; meta-model; statistical model; yield; climate-change; wheat yields; metaanalysis; uncertainty; simulation; impacts |
| Abstract |
Ensembles of process-based crop models are increasingly used to simulate crop growth for scenarios of temperature and/or precipitation changes corresponding to different projections of atmospheric CO2 concentrations. This approach generates large datasets with thousands of simulated crop yield data. Such datasets potentially provide new information but it is difficult to summarize them in a useful way due to their structural complexities. An associated issue is that it is not straightforward to compare crops and to interpolate the results to alternative climate scenarios not initially included in the simulation protocols. Here we demonstrate that statistical models based on random-coefficient regressions are able to emulate ensembles of process-based crop models. An important advantage of the proposed statistical models is that they can interpolate between temperature levels and between CO2 concentration levels, and can thus be used to calculate temperature and [CO2] thresholds leading to yield loss or yield gain, without rerunning the original complex crop models. Our approach is illustrated with three yield datasets simulated by 19 maize models, 26 wheat models, and 13 rice models. Several statistical models are fitted to these datasets, and are then used to analyze the variability of the yield response to [CO2] and temperature. Based on our results, we show that, for wheat, a [CO2] increase is likely to outweigh the negative effect of a temperature increase of +2 degrees C in the considered sites. Compared to wheat, required levels of [CO2] increase are much higher for maize, and intermediate for rice. For all crops, uncertainties in simulating climate change impacts increase more with temperature than with elevated [CO2]. |
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0168-1923 |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4714 |
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Salo, T.J.; Palosuo, T.; Kersebaum, K.C.; Nendel, C.; Angulo, C.; Ewert, F.; Bindi, M.; Calanca, P.; Klein, T.; Moriondo, M.; Ferrise, R.; Olesen, J.E.; Patil, R.H.; Ruget, F.; Takáč, J.; Hlavinka, P.; Trnka, M.; Rötter, R.P. |
| Title |
Comparing the performance of 11 crop simulation models in predicting yield response to nitrogen fertilization |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Agricultural Science |
Abbreviated Journal |
J. Agric. Sci. |
| Volume |
154 |
Issue |
7 |
Pages |
1218-1240 |
| Keywords |
northern growing conditions; climate-change impacts; spring barley; systems simulation; farming systems; soil properties; winter-wheat; dynamics; growth; management |
| Abstract |
Eleven widely used crop simulation models (APSIM, CERES, CROPSYST, COUP, DAISY, EPIC, FASSET, HERMES, MONICA, STICS and WOFOST) were tested using spring barley (Hordeum vulgare L.) data set under varying nitrogen (N) fertilizer rates from three experimental years in the boreal climate of Jokioinen, Finland. This is the largest standardized crop model inter-comparison under different levels of N supply to date. The models were calibrated using data from 2002 and 2008, of which 2008 included six N rates ranging from 0 to 150 kg N/ha. Calibration data consisted of weather, soil, phenology, leaf area index (LAI) and yield observations. The models were then tested against new data for 2009 and their performance was assessed and compared with both the two calibration years and the test year. For the calibration period, root mean square error between measurements and simulated grain dry matter yields ranged from 170 to 870 kg/ha. During the test year 2009, most models failed to accurately reproduce the observed low yield without N fertilizer as well as the steep yield response to N applications. The multi-model predictions were closer to observations than most single-model predictions, but multi-model mean could not correct systematic errors in model simulations. Variation in soil N mineralization and LAI development due to differences in weather not captured by the models most likely was the main reason for their unsatisfactory performance. This suggests the need for model improvement in soil N mineralization as a function of soil temperature and moisture. Furthermore, specific weather event impacts such as low temperatures after emergence in 2009, tending to enhance tillering, and a high precipitation event just before harvest in 2008, causing possible yield penalties, were not captured by any of the models compared in the current study. |
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0021-8596 1469-5146 |
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CropM, ft_macsur |
Approved |
no |
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MA @ admin @ |
Serial |
4713 |
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| Author |
Nguyen, T.P.L.; Seddaiu, G.; Virdis, S.G.P.; Tidore, C.; Pasqui, M.; Roggero, P.P. |
| Title |
Perceiving to learn or learning to perceive? Understanding farmers’ perceptions and adaptation to climate uncertainties |
Type |
Journal Article |
| Year |
2016 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agricultural Systems |
| Volume |
143 |
Issue |
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Pages |
205-216 |
| Keywords |
climate variability; socio-cognitive learning process; adaptation strategies; mediterranean agricultural systems; agricultural land-use; adaptive capacity; farming systems; variability; knowledge; risk; drought; africa; future; rain |
| Abstract |
Perception not only shapes knowledge but knowledge also shapes perception. Humans adapt to the natural world through a process of learning in which they interpret their sensory impressions in order to give meaning to their environment and act accordingly. In this research, we examined how farmers’ decision making is shaped in the context of changing climate. Using empirical data (face-to-face semi-structured interviews and questionnaires) on four Mediterranean farming systems from a case study located in Oristano (Sardinia, Italy) we sought to understand farmers’ perception of climate change and their behaviors in adjustment of farming practices. We found different perceptions among farmer groups were mainly associated with the different socio-cultural and institutional settings and perceived relationships between climate factors and impacts on each farming systems. The research findings on different perceptions among farmer groups can help to understand farmers’ current choices and attitudes of adaptation for supporting the development of appropriate adaptation strategies. In addition, the knowledge of socio-cultural and economic factors that lead to biases in climate perceptions can help to integrate climate communication into adaptation research for making sense of climate impacts and responses at farm level. |
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0308-521x |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4707 |
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| Author |
Conradt, T.; Gornott, C.; Wechsung, F. |
| Title |
Extending and improving regionalized winter wheat and silage maize yield regression models for Germany: Enhancing the predictive skill by panel definition through cluster analysis |
Type |
Journal Article |
| Year |
2016 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
| Volume |
216 |
Issue |
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Pages |
68-81 |
| Keywords |
cluster analysis; crop yield estimation; germany; multivariate regression; silage maize; winter wheat; climate-change; canadian prairies; crop yield; temperature; responses; environments; variability; cultivar; china |
| Abstract |
Regional agricultural yield assessments allowing for weather effect quantifications are a valuable basis for deriving scenarios of climate change effects and developing adaptation strategies. Assessing weather effects by statistical methods is a classical approach, but for obtaining robust results many details deserve attention and require individual decisions as is demonstrated in this paper. We evaluated regression models for annual yield changes of winter wheat and silage maize in more than 300 German counties and revised them to increase their predictive power. A major effort of this study was, however, aggregating separately estimated time series models (STSM) into panel data models (PDM) based on cluster analyses. The cluster analyses were based on the per-county estimates of STSM parameters. The original STSM formulations (adopted from a parallel study) contained also the non-meteorological input variables acreage and fertilizer price. The models were revised to use only weather variables as estimation basis. These consisted of time aggregates of radiation, precipitation, temperature, and potential evapotranspiration. Altering the input variables generally increased the predictive power of the models as did their clustering into PDM. For each crop, five alternative clusterings were produced by three different methods, and similarities between their spatial structures seem to confirm the existence of objective clusters about common model parameters. Observed smooth transitions of STSM parameter values in space suggest, however, spatial autocorrelation effects that could also be modeled explicitly. Both clustering and autocorrelation approaches can effectively reduce the noise in parameter estimation through targeted aggregation of input data. (C) 2015 Elsevier B.V. All rights reserved. |
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0168-1923 |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4709 |
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