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Author |
Mansouri, M.; Dumont, B.; Leemans, V.; Destain, M.-F. |
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Title |
Bayesian methods for predicting LAI and soil water content |
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Journal Article |
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Year |
2014 |
Publication |
Precision Agriculture |
Abbreviated Journal |
Precision Agric. |
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Volume |
15 |
Issue |
2 |
Pages |
184-201 |
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Keywords |
crop model; bayes; data assimilation; extended kalman filtering; particle filtering; variational filtering; leaf-area index; parameter-estimation; crop models; moisture; instruments; management; sensors; state |
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Abstract |
LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation. |
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1385-2256 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4629 |
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Rötter, R.P.; Palosuo, T.; Kersebaum, K.-C.; Angulo, C.; Bindi, M.; Ewert, F.; Ferrise, R.; Hlavinka, P.; Moriondo, M.; Olesen, J.E.; Takáč, J.; Trnka, M. |
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Title |
Simulation of spring barley yield in different climatic zones of Northern and Central Europe: A comparison of nine crop models |
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Journal Article |
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Year |
2012 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
133 |
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Pages |
23-36 |
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Keywords |
Climate; Crop growth simulation; Model comparison; Spring barley; Yield variability; Uncertainty; change impacts; nitrogen dynamics; high-temperature; soil-moisture; elevated co2; ceres-wheat; data set; growth; drought; sensitivity |
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► We compared nine crop simulation models for spring barley at seven sites in Europe. ► Applying crop models with restricted calibration leads to high uncertainties. ► Multi-crop model mean yield estimates were in good agreement with observations. ► The degree of uncertainty for simulated grain yield of barley was similar to winter wheat. ► We need more suitable data enabling us to verify different processes in the models. In this study, the performance of nine widely used and accessible crop growth simulation models (APES-ACE, CROPSYST, DAISY, DSSAT-CERES, FASSET, HERMES, MONICA, STICS and WOFOST) was compared during 44 growing seasons of spring barley (Hordeum vulgare L) at seven sites in Northern and Central Europe. The aims of this model comparison were to examine how different process-based crop models perform at multiple sites across Europe when applied with minimal information for model calibration of spring barley at field scale, whether individual models perform better than the multi-model mean, and what the uncertainty ranges are in simulated grain yields. The reasons for differences among the models and how results for barley compare to winter wheat are discussed. Regarding yield estimation, best performing based on the root mean square error (RMSE) were models HERMES, MONICA and WOFOST with lowest values of 1124, 1282 and 1325 (kg ha(-1)), respectively. Applying the index of agreement (IA), models WOFOST, DAISY and HERMES scored best having highest values (0.632, 0.631 and 0.585, respectively). Most models systematically underestimated yields, whereby CROPSYST showed the highest deviation as indicated by the mean bias error (MBE) (-1159 kg ha(-1)). While the wide range of simulated yields across all sites and years shows the high uncertainties in model estimates with only restricted calibration, mean predictions from the nine models agreed well with observations. Results of this paper also show that models that were more accurate in predicting phenology were not necessarily the ones better estimating grain yields. Total above-ground biomass estimates often did not follow the patterns of grain yield estimates and, thus, harvest indices were also different. Estimates of soil moisture dynamics varied greatly. In comparison, even though the growing cycle for winter wheat is several months longer than for spring barley, using RMSE and IA as indicators, models performed slightly, but not significantly, better in predicting wheat yields. Errors in reproducing crop phenology were similar, which in conjunction with the shorter growth cycle of barley has higher effects on accuracy in yield prediction. |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4592 |
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Kersebaum, K.C.; Boote, K.J.; Jorgenson, J.S.; Nendel, C.; Bindi, M.; Frühauf, C.; Gaiser, T.; Hoogenboom, G.; Kollas, C.; Olesen, J.E.; Rötter, R.P.; Ruget, F.; Thorburn, P.J.; Trnka, M.; Wegehenkel, M. |
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Title |
Analysis and classification of data sets for calibration and validation of agro-ecosystem models |
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Journal Article |
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Year |
2015 |
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Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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72 |
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402-417 |
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Keywords |
field experiments; data quality; crop modelling; data requirement; minimum data; software; different climatic zones; soil-moisture sensors; spatial variability; nitrogen dynamics; crop models; systems simulation; wheat yields; elevated co2; growth; field |
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Experimental field data are used at different levels of complexity to calibrate, validate and improve agroecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regarding their suitability for different modelling purposes. Weighting of inputs and variables for testing was set from the aspect of crop modelling. The software allows users to adjust weights according to their specific requirements. Background information is given for the variables with respect to their relevance for modelling and possible uncertainties. Examples are given for data sets of the different classes. The framework helps to assemble high quality data bases, to select data from data bases according to modellers requirements and gives guidelines to experimentalists for experimental design and decide on the most effective measurements to improve the usefulness of their data for modelling, statistical analysis and data assimilation. (C) 2015 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM, ft_macsur |
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MA @ admin @ |
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4563 |
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Nendel, C.; Wieland, R.; Mirschel, W.; Specka, X.; Guddat, C.; Kersebaum, K.C. |
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Title |
Simulating regional winter wheat yields using input data of different spatial resolution |
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Journal Article |
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Year |
2013 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
145 |
Issue |
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Pages |
67-77 |
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Keywords |
monica; agro-ecosystem model; dynamic modelling; scaling; input data; climate-change; crop yield; nitrogen dynamics; food security; mineral nitrogen; soil-moisture; scaling-up; model; maize; water |
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The success of using agro-ecosystem models for the high-resolution simulation of agricultural yields for larger areas is often hampered by a lack of input data. We investigated the effect of different spatially resolved soil and weather data used as input for the MONICA model on its ability to reproduce winter wheat yields in the Federal State of Thuringia, Germany (16,172 km(2)). The combination of one representative soil and one weather station was insufficient to reproduce the observed mean yield of 6.66 +/- 0.87 t ha(-1) for the federal state. Use of a 100 m x 100 m grid of soil and relief information combined with just one representative weather station yielded a good estimator (7.01 +/- 1.47 t ha(-1)). The soil and relief data grid used in combination with weather information from 14 weather stations in a nearest neighbour approach produced even better results (6.60 +/- 1.37 t ha(-1)); the same grid used with 39 additional rain gauges and an interpolation algorithm that included an altitude correction of temperature data slightly overpredicted the observed mean (7.36 +/- 1.17 t ha(-1)). It was concluded that the apparent success of the first two high-resolution approaches over the latter was based on two effects that cancelled each other out: the calibration of MONICA to match high-yield experimental data and the growth-defining and -limiting effect of weather data that is not representative for large parts of the region. At the county and farm level the MONICA model failed to reproduce the 1992-2010 time series of yields, which is partly explained by the fact that many growth-reducing factors were not considered in the model. (C) 2013 Elsevier B.V. All rights reserved. |
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0378-4290 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4498 |
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Author |
Mansouri, M.; Dumont, B.; Destain, M.-F. |
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Title |
Modeling and prediction of nonlinear environmental system using Bayesian methods |
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Journal Article |
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Year |
2013 |
Publication |
Computers and Electronics in Agriculture |
Abbreviated Journal |
Computers and Electronics in Agriculture |
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92 |
Issue |
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16-31 |
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Keywords |
state and parameter estimation; variational filter; particle filter; extended kalman filter; nonlinear environmental system; leaf area index and soil moisture model; extended kalman filter; state-space models; parameter-estimation; particle filters; navigation; tutorial; tracking |
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An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved. |
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0168-1699 |
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CropM |
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MA @ admin @ |
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4495 |
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