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Brylińska, M.; Sobkowiak, S.; Stefańczyk, E.; Śliwka, J. |
![goto web page (via DOI) doi](img/doi.gif)
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Title |
Potato cultivation system affects population structure of Phytophthora infestans |
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Journal Article |
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Year |
2016 |
Publication |
Fungal Ecology |
Abbreviated Journal |
Fungal Ecology |
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Volume |
20 |
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Pages |
132-143 |
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Keywords ![sorted by Keywords field, descending order (down)](img/sort_desc.gif) |
SSR; Population genetic structure; Late blight; Potato; late blight resistance; mating-type; microsatellite markers; phenotypic diversity; sexual reproduction; genotypic diversity; nordic countries; severe outbreaks; sarpo mira; pathogenicity |
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Phytophthora infestans is one of the most destructive potato pathogens. Many factors influence the population structure of P. infestans, including migration, climate and type of potato cultivation. Here, we analyse 365 P. infestans isolates collected from three regions of Poland over three years. We determined mating type, mitochondrial haplotype, resistance to metalaxyl, virulence and polymorphism at 14 simple sequence repeat (SSR) loci. Analysis of SSR markers showed high genetic diversity associated with this population. Model-based structure analysis grouped 299 unique genotypes into four main clusters. The P. infestans isolates collected from the Mlochow region, which has the most intensive level of potato cultivation, formed a distinct cluster, indicating a strong effect of the cultivation system on pathogen population structure. Three clusters contained isolates with frequent presence of three alleles at one locus, which may affect their capacity for sexual reproduction and preserve groups of fit genotypes that propagate asexually. (C) 2016 Elsevier Ltd and The British Mycological Society. |
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1754-5048 |
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CropM, ft_macsur |
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MA @ admin @ |
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4720 |
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Abdelrahman, H.M.; Olk, D.C.; Dinnes, D.; Ventrella, D.; Miano, T.; Cocozza, C. |
![goto web page (via DOI) doi](img/doi.gif)
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Title |
Occurrence and abundance of carbohydrates and amino compounds in sequentially extracted labile soil organic matter fractions |
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Journal Article |
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Year |
2016 |
Publication |
Journal of Soils and Sediments |
Abbreviated Journal |
Journal of Soils and Sediments |
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16 |
Issue |
10 |
Pages |
2375-2384 |
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Keywords ![sorted by Keywords field, descending order (down)](img/sort_desc.gif) |
Light fraction; Mobile humic acid; Organic farming; Particulate organic matter; SOM sequential extraction |
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Abstract |
Purpose The study aimed to describe the carbohydrates and amino compounds content in soil, the light fraction (LF), the >53 μm particulate organic matter (POM), and the mobile humic acid (MHA) fraction and to find out whether the carbohydrates and amino compounds can be used to explain the origin of SOM fractions. Materials and methods Soil samples were collected from two agricultural fields managed under organic farming in southern Italy. The LF, the POM, and the MHA were sequentially extracted from each soil sample then characterized. Seven neutral sugars and 19 amino compounds (amino acids and amino sugars) were determined in each soil sample and its correspondent fractions. Results and discussion The MHA contained less carbohydrate than the LF or the POM but its carbohydrates, although dominated by arabinose, were relatively with larger microbial contribution as revealed by the mannose/xylose ratio. The amino compounds were generally less in the LF or the POM than in the MHA, while the fungal (aspartic and serine) and bacterial (alanine and glycine) amino acids were larger in the MHA than in the LF or the POM, underlining the microbial contribution to the MHA. Results from both sites indicated that total carbohydrates content decreased moving from the LF (younger fraction) to the MHA (older fraction), which seems to follow a decomposition continuum of organic matter in the soil-plant system. Conclusions The study showed that the MHA is a labile humified fraction of soil C due to its content of carbohydrates and concluded that the content of carbohydrates and amino compounds in the LF, the POM and the MHA can depict the nature of these fractions and their cycling pattern and response to land management. |
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1439-0108 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4992 |
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De Pascale, S.; Maggio, A.; Orsini, F.; Stanghellini, C.; Heuvelink, E. |
![goto web page (via DOI) doi](img/doi.gif)
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Title |
Growth response and radiation use efficiency in tomato exposed to short-term and long-term salinized soils |
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Journal Article |
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Year |
2015 |
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Scientia Horticulturae |
Abbreviated Journal |
Scientia Horticulturae |
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189 |
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139-149 |
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Keywords ![sorted by Keywords field, descending order (down)](img/sort_desc.gif) |
Leaf osmotic adjustment; Stomatal resistance; Leaf water potential; Light; Salt stress; RUE; physiological-response; salt tolerance; drought stress; water-use; yield; nitrogen; interception; productivity; leaf; photosynthesis |
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Farmlands are increasingly exposed to degradation phenomena associated to climate change and agricultural practices, including irrigation. It is estimated that about 20% of the world’s irrigated land is salt affected. In this paper we aimed at evaluating the effect of seasonal and multiannual soil satinization on growth, yield, and radiation use efficiency of tomato in open field. Two field experiments were carried out at the Experimental Station of the University of Naples Federico II (latitude 40 degrees 31’N longitude 14 degrees 58’E) (Italy) on tomato during 2004 and 2005 to study the effect of five levels of water salinity: NSC (EC = 0.5 dS m(-1)), SW1 (EC= 2.3 dS m(-1)), SW2 (EC= 4.4 dS m(-1)), SW3 (EC= 8.5 dS m(-1)) and SW4 (EC= 15.7 dS m(-1)) in a soil exposed to one-season salinization (ST = short-term) and an adjacent soil exposed to >20 years salinization (LT = long-term). Plant growth, yield and fruit quality (pH, EC, total soluble solids and the concentration of reducing sugars and of titratable acids), and plant water relations were measured and radiation use efficiency (RUE) was calculated. Increasing water salinity negatively affected the leaf area index (LAI), radiation use efficiency (RUE) and above-ground dry weight (DW) accumulation resulting in lower total and marketable yield. Maximum total and marketable yield obtained with the NSC treatment were respectively 117.9 and 111.0 Mg ha(-1) in 2004 and 113.1 and 107.9 Mg ha(-1) in 2005. Although the smaller leaf area of salinized plants was largely responsible for reduced RUE, we found approximately 50% of this reduction to be accounted for by processes other than changed crop architecture. These may include an increased stomatal resistance, increased mesophyll resistance and other impaired metabolic functions that may occur at high salinity. Remarkably, we found that LT salinized plants had a slightly better efficiency of use of intercepted radiation (RUEIR) at a given EC of soil extract than ST salinized plants indicating that LT salinization, and consequent permanent modifications of the soil physical properties, may trigger additional physiological mechanisms of adaptation compared to ST salinized plants. These differences are relevant in light of the evolution of salinized areas, also in response to climate change. |
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0304-4238 |
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CropM, ftnotmacsur |
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MA @ admin @ |
Serial |
4557 |
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Author |
Cassardo, C.; Andreoli, V. |
![find record details (via OpenURL) openurl](img/xref.gif)
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Title |
On the Representativeness of UTOPIA Land Surface Model for Creating a Database of Surface Layer, Vegetation and Soil Variables in Piedmont Vineyards, Italy |
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Journal Article |
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Year |
2019 |
Publication |
Applied Sciences-Basel |
Abbreviated Journal |
Applied Sciences-Basel |
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Volume |
9 |
Issue |
18 |
Pages |
3880 |
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Keywords ![sorted by Keywords field, descending order (down)](img/sort_desc.gif) |
land-surface; UTOPIA; NOAH; GLDAS; micrometeorology; exchanges; processes; vineyards; cabernet-sauvignon; climate-change; wine color; temperature; parameterization; simulations; circulation; balances; moisture; sunlight |
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The main aim of the paper is to show how, and how many, simulations carried out using the Land Surface Model UTOPIA (University of TOrino model of land Process Interaction with Atmosphere) are representative of the micro-meteorological conditions and exchange processes at the atmosphere/biosphere interface, with a particular focus on heat and hydrologic transfers, over an area of the Piemonte (Piedmont) region, NW Italy, which is characterized by the presence of many vineyards. Another equally important aim is to understand how much the quality of the simulation outputs was influenced by the input data, whose measurements are often unavailable for long periods over country areas at an hourly basis. Three types of forcing data were used: observations from an experimental campaign carried out during the 2008, 2009, and 2010 vegetative seasons in three vineyards, and values extracted from the freely available Global Land Data Assimilation System (GLDAS, versions 2.0 and 2.1). Since GLDAS also contains the outputs of the simulations performed using the Land Surface Model NOAH, an additional intercomparison between the two models, UTOPIA and NOAH, both driven by the same GLDAS datasets, was performed. The intercomparisons were performed on the following micro-meteorological variables: net radiation, sensible and latent turbulent heat fluxes, and temperature and humidity of soil. The results of this study indicate that the methodology of employing land surface models driven by a gridded database to evaluate variables of micro-meteorological and agronomic interest in the absence of observations is suitable and gives satisfactory results, with uncertainties comparable to measurement errors, thus, allowing us to also evaluate some time trends. The comparison between GLDAS2.0 and GLDAS2.1 indicates that the latter generally produces simulation outputs more similar to the observations than the former, using both UTOPIA and NOAH models. |
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2020-02-14 |
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CropM, ft_macsur |
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MA @ admin @ |
Serial |
5228 |
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Author |
Van Oijen, M.; Höglind, M. |
![find record details (via OpenURL) openurl](img/xref.gif)
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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207 |
Issue |
3 |
Pages |
627-643 |
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Keywords ![sorted by Keywords field, descending order (down)](img/sort_desc.gif) |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
Serial |
4820 |
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Permanent link to this record |