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Author |
Mansouri, M.; Dumont, B.; Leemans, V.; Destain, M.-F. |
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Title |
Bayesian methods for predicting LAI and soil water content |
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Journal Article |
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Year |
2014 |
Publication |
Precision Agriculture |
Abbreviated Journal |
Precision Agric. |
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Volume |
15 |
Issue |
2 |
Pages |
184-201 |
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Keywords  |
crop model; bayes; data assimilation; extended kalman filtering; particle filtering; variational filtering; leaf-area index; parameter-estimation; crop models; moisture; instruments; management; sensors; state |
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Abstract |
LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation. |
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1385-2256 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4629 |
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Persson, T.; Höglind, M.; Gustavsson, A.-M.; Halling, M.; Jauhiainen, L.; Niemeläinen, O.; Thorvaldsson, G.; Virkajärvi, P. |
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Title |
Evaluation of the LINGRA timothy model under Nordic conditions |
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Journal Article |
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Year |
2014 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
161 |
Issue |
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Pages |
87-97 |
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Keywords |
crop model; forage grass; perennial ley; simulation model; nutritive-value; climate-change; systems simulation; growth; dynamics; crop; performance; regrowth; calibration; pastures |
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Simulation models are frequently applied to determine the production potential of forage grasses under various scenarios, including climate change. Thorough calibrations and evaluations of forage grass models can help improve their applicability. This study evaluated the ability of the Light Interception and Utilization Simulator-GRAss (LINGRA) model to predict biomass yield of timothy (Phleum pratense L. cv. Grindstad) in the Nordic countries. Variety trial data for the first and second year after establishment were obtained for seven locations: Jokioinen, Finland (60 degrees 48 ‘ N; 23 degrees 29 ‘ E), Maaninka, Finland (63 degrees 09 ‘ N; 27 degrees 18 ‘ E), Korpa, Iceland (64 degrees 09 ‘ N; 21 degrees 45 ‘ W), Srheim, Norway (58 degrees 41 ‘ N; 5 degrees 39 ‘ E), Lillerud, Sweden (59 degrees 24’ N; 13 degrees 16 ‘ E), Ostersund, Sweden (63 degrees 15 ‘ N; 14 degrees 34 ‘ E) and Ulna Sweden (63 degrees 49 ‘ N; 20 degrees 13 ‘ E) from 1992 to 2012. Two calibrations of the LINGRA model were carried out using Bayesian techniques. In the first of these (SRrheim calibration), data on biomass yield and underlying variables obtained from independent field trials at Srheim were used. In the second (Nordic calibration), biomass data from the other locations were used as well. The model was validated against the remaining set of biomass yields from all locations not included in the Nordic calibration. The observed total seasonal yield the first and second year after establishment was 913 and 991 g DM m(-2) respectively on average across the locations. The corresponding average simulated yield after the Srheim calibration was 1044 (root mean square error (RMSE) 258) and 1112 g DM m(-2) (RMSE 312), respectively. After the Nordic calibration, the simulated average total seasonal yield was 863 (RMSE 242) the first year and 927 g DM m(-2) (RMSE 271) the second year after establishment. The differences between the observed and simulated first cut yield followed the same patterns, whereas the prediction accuracy for second cut yield did not differ substantially between the calibration approaches.Using the parameter set from the Nordic region decreased the model predictability at Srheim compared with only using model parameters derived from this location. These results show that using biomass data from several locations, instead of only one specific location, in the calibration of the LINGRA model improved the overall prediction accuracy of first cut dry matter yield and total seasonal dry matter yield across an environmentally heterogeneous region. To further analyse the usefulness of including multi-site data in forage grass model calibrations, other forage grass models could be evaluated against the same dataset. |
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0378-4290 |
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CropM, ft_macsur |
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MA @ admin @ |
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4634 |
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Webber, H.; Gaiser, T.; Oomen, R.; Teixeira, E.; Zhao, G.; Wallach, D.; Zimmermann, A.; Ewert, F. |
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Title |
Uncertainty in future irrigation water demand and risk of crop failure for maize in Europe |
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Journal Article |
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Year |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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Keywords |
crop model; impact assessment; crop water use; evapotranspiration; irrigation; drought; uncertainty |
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While crop models are widely used to assess the change in crop productivity with climate change, their skill in assessing irrigation water demand or the risk of crop failure in large area impact assessments is relatively unknown. The objective of this study is to investigate which aspects of modeling crop water use (reference crop evapotranspiration (ET0), soil water extraction, soil evaporation, soil water balance and root growth) contributes most to the variability in estimates of maize crop water use and the risk of crop failure, and demonstrate the resulting uncertainty in a climate change impact study for Europe. The SIMPLACE crop modeling framework was used to couple the LINTUL5 crop model in factorial combinations of 2-3 different approaches for simulating the 5 aspects of crop water use, resulting in 51 modeling approaches. Using experiments in France and New Zeland, analysis of total sensitivity revealed that ET0 explained the most variability in both irrigated maize water use and rainfed grain yield levels, with soil evaporation also imporatant in the French experiment. In the European impact study, net irrigation requirement differed by 36% between the Penman and Hargreaves ET0 methods in the baseline period. Average EU grain yields were similar between models, but differences approached 1-2 tonnes in parts of France and Southern Europe. EU wide esimates of crop failure in the historical period ranged between 5.4 years for Priestley-Taylor to every 7.9 years for the Penman ET0 methods. While the uncertainty in absolute values between models was significant, estimates of relative changes were similar between models, confirming the utility of crop models in assessing climate change impacts. If ET0 estimates in crop models can be improved, through the use of appropriate methods, uncertainty in irrigation water demand as well as in yield estimates under drought can be reduced. |
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2016-09-13 |
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Newsletter July |
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CropM; wos; ft=macsur; |
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MA @ admin @ |
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4778 |
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Zhao, G.; Hoffmann, H.; van Bussel, L.G.J.; Enders, A.; Specka, X.; Sosa, C.; Yeluripati, J.; Tao, F.L.; Constantin, J.; Raynal, H.; Teixeira, E.; Grosz, B.; Doro, L.; Zhao, Z.G.; Nendel, C.; Kiese, R.; Eckersten, H.; Haas, E.; Vanuytrecht, E.; Wang, E.; Kuhnert, M.; Trombi, G.; Moriondo, M.; Bindi, M.; Lewan, E.; Bach, M.; Kersebaum, K.C.; Rotter, R.; Roggero, P.P.; Wallach, D.; Cammarano, D.; Asseng, S.; Krauss, G.; Siebert, S.; Gaiser, T.; Ewert, F. |
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Title |
Effect of weather data aggregation on regional crop simulation for different crops, production conditions, and response variables |
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Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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65 |
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141-157 |
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Keywords |
crop model; model comparison; spatial resolution; data aggregation; spatial heterogeneity; scaling; climate-change scenarios; sub-saharan africa; winter-wheat; spatial-resolution; yield response; input data; systems simulation; large-scale; soil data; part i |
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We assessed the weather data aggregation effect (DAE) on the simulation of cropping systems for different crops, response variables, and production conditions. Using 13 process-based crop models and the ensemble mean, we simulated 30 yr continuous cropping systems for 2 crops (winter wheat and silage maize) under 3 production conditions for the state of North Rhine-Westphalia, Germany. The DAE was evaluated for 5 weather data resolutions (i.e. 1, 10, 25, 50, and 100 km) for 3 response variables including yield, growing season evapotranspiration, and water use efficiency. Five metrics, viz. the spatial bias (Delta), average absolute deviation (AAD), relative AAD, root mean squared error (RMSE), and relative RMSE, were used to evaluate the DAE on both the input weather data and simulated results. For weather data, we found that data aggregation narrowed the spatial variability but widened the., especially across mountainous areas. The DAE on loss of spatial heterogeneity and hotspots was stronger than on the average changes over the region. The DAE increased when coarsening the spatial resolution of the input weather data. The DAE varied considerably across different models, but changed only slightly for different production conditions and crops. We conclude that if spatially detailed information is essential for local management decision, higher resolution is desirable to adequately capture the spatial variability for heterogeneous regions. The required resolution depends on the choice of the model as well as the environmental condition of the study area. |
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0936-577x |
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CropM, ft_macsur |
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MA @ admin @ |
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4754 |
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Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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52 |
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121-135 |
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Keywords |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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MA @ admin @ |
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4520 |
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