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Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume |
52 |
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Pages |
121-135 |
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Keywords  |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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Abstract |
This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4520 |
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Author |
Francone, C.; Cassardo, C.; Richiardone, R.; Confalonieri, R. |
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Title |
Sensitivity Analysis and Investigation of the Behaviour of the UTOPIA Land-Surface Process Model: A Case Study for Vineyards in Northern Italy |
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Journal Article |
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Year |
2012 |
Publication |
Boundary-Layer Meteorology |
Abbreviated Journal |
Boundary-Layer Meteorology |
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144 |
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3 |
Pages |
419-430 |
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Keywords |
energy balance; hydrological balance; land-surface model; morris method; vegetation cover; vitis vinifera l.; atmosphere transfer scheme; environmental-models; energy-balance; uncertainty; simulation; canopy |
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Abstract |
We used sensitivity-analysis techniques to investigate the behaviour of the land-surface model UTOPIA while simulating the micrometeorology of a typical northern Italy vineyard (Vitis vinifera L.) under average climatic conditions. Sensitivity-analysis experiments were performed by sampling the vegetation parameter hyperspace using the Morris method and quantifying the parameter relevance across a wide range of soil conditions. This method was used since it proved its suitability for models with high computational time or with a large number of parameters, in a variety of studies performed on different types of biophysical models. The impact of input variability was estimated on reference model variables selected among energy (e.g. net radiation, sensible and latent heat fluxes) and hydrological (e.g. soilmoisture, surface runoff, drainage) budget components. Maximum vegetation cover and maximum leaf area index were ranked as the most relevant parameters, with sensitivity indices exceeding the remaining parameters by about one order of magnitude. Soil variability had a high impact on the relevance of most of the vegetation parameters: coefficients of variation calculated on the sensitivity indices estimated for the different soils often exceeded 100 %. The only exceptions were represented by maximum vegetation cover and maximum leaf area index, which showed a low variability in sensitivity indices while changing soil type, and confirmed their key role in affecting model results. |
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0006-8314 1573-1472 |
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CropM |
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MA @ admin @ |
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4470 |
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Korhonen, P.; Palosuo, T.; Persson, T.; Höglind, M.; Jego, G.; Van Oijen, M.; Gustavsson, A.-M.; Belanger, G.; Virkajärvi, P. |
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Title |
Modelling grass yields in northern climates – a comparison of three growth models for timothy |
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Journal Article |
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Year |
2018 |
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Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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224 |
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37-47 |
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Keywords |
Forage grass; Model comparison; Timothy; Uncertainty; Yield; Nutritive-Value; Catimo Model; Nitrogen Balances; Simulation; Regrowth; Wheat; Stics; Dynamics; Harvest; Water |
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During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratertse L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil -crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development. |
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2018-07-12 |
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0378-4290 |
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CropM, ft_macsur |
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MA @ admin @ |
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5206 |
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Lindeskog, M.; Arneth, A.; Bondeau, A.; Waha, K.; Seaquist, J.; Olin, S.; Smith, B. |
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Title |
Implications of accounting for land use in simulations of ecosystem carbon cycling in Africa |
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Journal Article |
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2013 |
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Earth System Dynamics |
Abbreviated Journal |
Earth System Dynamics |
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4 |
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2 |
Pages |
385-407 |
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Keywords |
global vegetation model; sub-saharan africa; climate-change; yield gaps; co2; balance; dynamics; atmosphere; cover; variability |
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Dynamic global vegetation models (DGVMs) are important tools for modelling impacts of global change on ecosystem services. However, most models do not take full account of human land management and land use and land cover changes (LULCCs). We integrated croplands and pasture and their management and natural vegetation recovery and succession following cropland abandonment into the LPJ-GUESS DGVM. The revised model was applied to Africa as a case study to investigate the implications of accounting for land use on net ecosystem carbon balance (NECB) and the skill of the model in describing agricultural production and reproducing trends and patterns in vegetation structure and function. The seasonality of modelled monthly fraction of absorbed photosynthetically active radiation (FPAR) was shown to agree well with satellite-inferred normalised difference vegetation index (NDVI). In regions with a large proportion of cropland, the managed land addition improved the FPAR vs. NDVI fit significantly. Modelled 1991-1995 average yields for the seven most important African crops, representing potential optimal yields limited only by climate forcings, were generally higher than reported FAO yields by a factor of 2-6, similar to previous yield gap estimates. Modelled inter-annual yield variations during 1971-2005 generally agreed well with FAO statistics, especially in regions with pronounced climate seasonality. Modelled land-atmosphere carbon fluxes for Africa associated with land use change (0.07 PgC yr(-1) release to the atmosphere for the 1980s) agreed well with previous estimates. Cropland management options (residue removal, grass as cover crop) were shown to be important to the land-atmosphere carbon flux for the 20th century. |
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2190-4979 |
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CropM |
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MA @ admin @ |
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4494 |
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Sándor, R.; Ma, S.; Acutis, M.; Barcza, Z.; Ben Touhami, H.; Doro, L.; Hidy, D.; Köchy, M.; Lellei-Kovács, E.; Minet, J.; Perego, A.; Rolinski, S.; Ruget, F.; Seddaiu, G.; Wu, L.; Bellocchi, G. |
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Uncertainty in simulating biomass yield and carbon–water fluxes from grasslands under climate change |
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Journal Article |
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2015 |
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Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
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6 |
Issue |
01 |
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49-51 |
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grassland productivity; carbon balance; model simulation; uncertainty; sensitivity |
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2040-4700 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4651 |
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