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Mueller, L., Schindler, U., Shepherd, T. G., Ball, B. C., Smolentseva, E., Hu, C., et al. (2012). A framework for assessing agricultural soil quality on a global scale. Archives of Agronomy and Soil Science, 58(sup1), S76–S82.
Abstract: This paper provides information about a novel approach of rating agricultural soil quality (SQ) and crop yield potentials consistently over a range of spatial scales. The Muencheberg Soil Quality Rating is an indicator-based straightforward overall assessment method of agricultural SQ. It is a framework covering aspects of soil texture, structure, topography and climate which is based on 8 basic indicators and more than 12 hazard indicators. Ratings are performed by visual methods of soil evaluation. A field manual is then used to provide ratings from tables based on indicator thresholds. Finally, overall rating scores are given, ranging from 0 (worst) to 100 (best) to characterise crop yield potentials. The current approach is valid for grassland and cropland. Field tests in several countries confirmed the practicability and reliability of the method. At field scale, soil structure is a crucial, management induced criterion of agricultural SQ. At the global scale, climate controlled hazard indicators of drought risk and soil thermal regime are crucial for SQ and crop yield potentials. Final rating scores are well correlated with crop yields. We conclude that this system could be evolved for ranking and controlling agricultural SQ on a global scale.
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Wallach, D., Nissanka, S. P., Karunaratne, A. S., Weerakoon, W. M. W., Thorburn, P. J., Boote, K. J., et al. (2016). Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice. European Journal of Agronomy, .
Abstract: We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures.
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Jing, Q., Bélanger, G., Baron, V., Bonesmo, H., & Virkajärvi, P. (2013). Simulating the Nutritive Value of Timothy Summer Regrowth. Agronomy Journal, 105(3), 563.
Abstract: The process-based grass model, CATIMO, simulates the spring growth and nutritive value of timothy (Phleum pratense L.), a forage species widely grown in Scandinavia and Canada, but the nutritive value of the summer regrowth has never been simulated. Our objective was to improve CATIMO for simulating the N concentration, neutral detergent fiber (NDF), in vitro digestibility of NDF (dNDF), and in vitro true digestibility of dry matter (IVTD) of summer regrowth. Daily changes in summer regrowth nutritive value were simulated by modifying key crop parameters that differed from spring growth. More specifically, the partitioning fraction to leaf blades was increased to increase the leaf-to-weight ratio, and daily changes in NDF and dNDF of leaf blades and stems were reduced. The modified CATIMO model was evaluated with data from four independent experiments in eastern and western Canada and Finland. The model performed better for eastern Canada than for the other locations, but the nutritive value attributes of the summer regrowth across locations (range of normalized RMSE = 8-25%, slope < 0.17, R-2 < 0.10) were not simulated as well as those of the spring growth (range of normalized RMSE = 4-16%, 0.85 < slope < 1.07, R-2 > 0.61). These modeling results highlight knowledge gaps in timothy summer regrowth and prospective research directions: improved knowledge of factors controlling the nutritive value of the timothy summer regrowth and experimental measurements of leaf-to-weight ratio and of the nutritive value of leaves and stems.
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Andreoli, V., Cassardo, C., Iacona, L. T., & Spanna, F. (2019). Description and Preliminary Simulations with the Italian Vineyard Integrated Numerical Model for Estimating Physiological Values (IVINE). Agronomy, 9(2).
Abstract: The numerical crop growth model Italian Vineyard Integrated Numerical model for Estimating physiological values (IVINE) was developed in order to evaluate environmental forcing effects on vine growth. The IVINE model simulates vine growth processes with parameterizations, allowing the understanding of plant conditions at a vineyard scale. It requires a set of meteorology data and soil water status as boundary conditions. The primary model outputs are main phenological stages, leaf development, yield, and sugar concentration. The model requires setting some variety information depending on the cultivar: At present, IVINE is optimized for Vitis vinifera L. Nebbiolo, a variety grown mostly in the Piedmont region (northwestern Italy). In order to evaluate the model accuracy, IVINE was validated using experimental observations gathered in Piedmontese vineyards, showing performances similar or slightly better than those of other widely used crop models. The results of a sensitivity analysis performed to highlight the effects of the variations of air temperature and soil water potential input variables on IVINE outputs showed that most phenological stages anticipated with increasing temperatures, while berry sugar content saturated at about 25.5 °Bx. Long-term (60 years, in the period 1950–2009) simulations performed over a Piedmontese subregion showed statistically significant variations of most IVINE output variables, with larger time trend slopes referring to the most recent 30-year period (1980–2009), thus confirming that ongoing climate change started influencing Piedmontese vineyards in 1980.
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Tao, F., Roetter, R. P., Palosuo, T., Diaz-Ambrona, C. G. H., Ines Minguez, M., Semenov, M. A., et al. (2017). Designing future barley ideotypes using a crop model ensemble. Europ. J. Agron., 82, 144–162.
Abstract: Climate change and its associated higher frequency and severity of adverse weather events require genotypic adaptation. Process-based ecophysiological modelling offers a powerful means to better target and accelerate development of new crop cultivars. Barley (Hordeum vulgare L) is an important crop throughout the world, and a good model for study of the genetics of stress adaptation because many quantitative trait loci and candidate genes for biotic and abiotic stress tolerance have been identified in it. Here, we developed a new approach to design future crop ideotypes using an ensemble of eight barley simulation models (i.e. APSIM, CropSyst, HERMES, MCWLA, MONICA, SIMPLACE, Sirius Quality, and WOFOST), and applied it to design climate-resilient barley ideotypes for Boreal and Mediterranean climatic zones in Europe. The results showed that specific barley genotypes, represented by sets of cultivar parameters in the crop models, could be promising under future climate change conditions, resulting in increased yields and low inter-annual yield variability. In contrast, other genotypes could result in substantial yield declines. The most favorable climate-zone-specific barley ideotypes were further proposed, having combinations of several key genetic traits in terms of phenology, leaf growth, photosynthesis, drought tolerance, and grain formation. For both Boreal and Mediterranean climatic zones, barley ideotypes under future climatic conditions should have a longer reproductive growing period, lower leaf senescence rate, larger radiation use efficiency or maximum assimilation rate, and higher drought tolerance. Such characteristics can produce substantial positive impacts on yields under contrasting conditions. Moreover, barley ideotypes should have a low photoperiod and high vernalization sensitivity for the Boreal climatic zone; for the Mediterranean, in contrast, it should have a low photoperiod and low vernalization sensitivity. The drought-tolerance trait is more beneficial for the Mediterranean than for the Boreal climatic zone. Our study demonstrates a sound approach to design future barley ideotypes based on an ensemble of well-tested, diverse crop models and on integration of knowledge from multiple disciplines. The robustness of model-aided ideotypes design can be further enhanced by continuously improving crop models and enhancing information exchange between modellers, agro-meteorologists, geneticists, physiologists, and plant breeders. (C) 2016 Elsevier B.V. All rights reserved.
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