| |
Records |
Links |
|
Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
|
| |
Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
Type |
Journal Article |
| |
Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
|
| |
Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
|
| |
Keywords  |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
|
| |
Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
|
| |
Address |
2020-02-14 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0022-0957 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
LiveM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
5231 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Yin, X.G.; Kersebaum, K.C.; Kollas, C.; Manevski, K.; Baby, S.; Beaudoin, N.; Ozturk, I.; Gaiser, T.; Wu, L.H.; Hoffmann, M.; Charfeddine, M.; Conradt, T.; Constantin, J.; Ewert, F.; de Cortazar-Atauri, I.G.; Giglio, L.; Hlavinka, P.; Hoffmann, H.; Launay, M.; Louarn, G.; Manderscheid, R.; Mary, B.; Mirschel, W.; Nende, C.; Pacholskin, A.; Palosuo, T.; Ripoche-Wachter, D.; Rotter, R.P.; Ruget, F.; Sharif, B.; Trnka, M.; Ventrella, D.; Weigel, H.J.; Olesen, J.E.; Yin, X.; Kersebaum, K.C.; Kollas, C.; Manevski, K.; Baby, S.; Beaudoin, N.; Ozturk, I.; Gaiser, T.; Wu, L.; Hoffmann, M.; Charfeddine, M.; Conradt, T.; Constantin, J.; Ewert, F.; de Cortazar-Atauri, I.G.; Giglio, L.; Hlavinka, P.; Hoffmann, H.; Launay, M.; Louarn, G.; Manderscheid, R.; Mary, B.; Mirschel, W.; Nende, C.; Pacholskin, A.; Palosuo, T.; Ripoche-Wachter, D.; Roetter, R.P.; Ruget, F.; Sharif, B.; Trnka, M.; Ventrella, D.; Weigel, H.-J.; Olesen, J.E. |
|
| |
Title |
Performance of process-based models for simulation of grain N in crop rotations across Europe |
Type |
Journal Article |
| |
Year |
2017 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
|
| |
Volume |
154 |
Issue |
|
Pages |
63-77 |
|
| |
Keywords |
Calibration, Crop model, Crop rotation, Grain N content, Model evaluation, Model initialization; Climate-Change; Winter-Wheat; Nitrogen-Fertilization; Agroecosystem; Models; Multimodel Ensembles; Yield Response; Use Efficiency; Soil-Moisture; Oilseed Rape; Elevated Co2 |
|
| |
Abstract |
The accurate estimation of crop grain nitrogen (N; N in grain yield) is crucial for optimizing agricultural N management, especially in crop rotations. In the present study, 12 process-based models were applied to simulate the grain N of i) seven crops in rotations, ii) across various pedo-climatic and agro-management conditions in Europe, under both continuous simulation and single year simulation, and for iv) two calibration levels, namely minimal and detailed calibration. Generally, the results showed that the accuracy of the simulations in predicting grain N increased under detailed calibration. The models performed better in predicting the grain N of winter wheat (Triticum aestivum L.), winter barley (Hordewn vulgare L.) and spring barley (Hordeum vulgare L.) compared to spring oat (Avena saliva L.), winter rye (Secale cereale L.), pea (Piswn sativum L.) and winter oilseed rape (Brassica napus L.). These differences are linked to the intensity of parameterization with better parameterized crops showing lower prediction errors. The model performance was influenced by N fertilization and irrigation treatments, and a majority of the predictions were more accurate under low N and rainfed treatments. Moreover, the multi-model mean provided better predictions of grain N compared to any individual model. In regard to the Individual models, DAISY, FASSET, HERMES, MONICA and STICS are suitable for predicting grain N of the main crops in typical European crop rotations, which all performed well in both continuous simulation and single year simulation. Our results show that both the model initialization and the cover crop effects in crop rotations should be considered in order to achieve good performance of continuous simulation. Furthermore, the choice of either continuous simulation or single year simulation should be guided by the simulation objectives (e.g. grain yield, grain N content or N dynamics), the crop sequence (inclusion of legumes) and treatments (rate and type of N fertilizer) included in crop rotations and the model formalism. |
|
| |
Address |
2017-06-12 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0308-521x |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4963 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Ma, S.; Lardy, R.; Graux, A.-I.; Ben Touhami, H.; Klumpp, K.; Martin, R.; Bellocchi, G. |
|
| |
Title |
Regional-scale analysis of carbon and water cycles on managed grassland systems |
Type |
Journal Article |
| |
Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
|
| |
Volume |
72 |
Issue |
|
Pages |
356-371 |
|
| |
Keywords |
carbon flux; eddy flux measurements; model evaluation; pasture simulation model (pasim); water balance; pasture simulation-model; nitrous-oxide emissions; primary productivity npp; comparing global-models; net ecosystem exchange; greenhouse-gas balance; climate-change; agricultural systems; co2 exchange; european grasslands |
|
| |
Abstract |
Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system. |
|
| |
Address |
2015-10-09 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1364-8152 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4695 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Özkan, Ş.; Farquharson, R.J.; Hill, J.; Malcolm, B. |
|
| |
Title |
A stochastic analysis of the impact of input parameters on profit of Australian pasture-based dairy farms under variable carbon price scenarios |
Type |
Journal Article |
| |
Year |
2015 |
Publication |
Environmental Science & Policy |
Abbreviated Journal |
Environmental Science & Policy |
|
| |
Volume |
48 |
Issue |
|
Pages |
163-171 |
|
| |
Keywords |
carbon tax; operating profit; stochastic dominance; dairy; feeding system; mitigation; cows; systems; efficiency; risk |
|
| |
Abstract |
The imposition of a carbon tax in the economy will have indirect impacts on dairy farmers in Australia. Although there is a great deal of information available regarding mitigation strategies both in Australia and internationally, there seems to be a lack of research investigating the variable prices of carbon-based emissions on dairy farm operating profits in Australia. In this study, a stochastic analysis comparing the uncertainty in income in response to different prices on carbon-based emissions was conducted. The impact of variability in pasture consumption and variable prices of concentrates and hay on farm profitability was also investigated. The two different feeding systems examined were a ryegrass pasture-based system (RM) and a complementary forage-based system (CF). Imposing a carbon price ($20-$60) and not changing the systems reduced the farm operating profits by 28.4% and 25.6% in the RM and CF systems, respectively compared to a scenario where no carbon price was imposed. Different farming businesses will respond to variability in the rapidly changing operating environment such as fluctuations in pasture availability, price of purchased feeds and price of milk or carbon emissions differently. Further, in case there is a carbon price imposed for GHG emissions emanated from dairy farming systems, changing from pasture-based to more complex feeding systems incorporating home-grown double crops may reduce the reductions in farm operating profits. There is opportunity for future studies to focus on the impacts of different mitigation strategies and policy applications on farm operating profits. (C) 2015 Elsevier Ltd. All rights reserved. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1462-9011 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
LiveM |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4574 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sándor, R.; Barcza, Z.; Hidy, D.; Lellei-Kovács, E.; Ma, S.; Bellocchi, G. |
|
| |
Title |
Modelling of grassland fluxes in Europe: evaluation of two biogeochemical models |
Type |
Journal Article |
| |
Year |
2016 |
Publication |
Agriculture, Ecosystems and Environment |
Abbreviated Journal |
Agric. Ecosyst. Environ. |
|
| |
Volume |
215 |
Issue |
|
Pages |
1-19 |
|
| |
Keywords |
carbon-water fluxes; climate change; grasslands; model comparison; net ecosystem exchange; terrestrial carbon balance; pasture simulation-model; climate-change; nitrous-oxide; land-use; co2; photosynthesis; responses; water |
|
| |
Abstract |
Two independently developed simulation models – the grassland-specific PaSim and the biome-generic Biome-BGC MuSo (BBGC MuSo) – linking climate, soil, vegetation and management to ecosystem biogeochemical cycles were compared in a simulation of carbon (C) and water fluxes. The results were assessed against eddy-covariance flux data from five observational grassland sites representing a range of conditions in Europe: Grillenburg in Germany, Laqueuille in France with both extensive and intensive management, Monte Bondone in Italy and Oensingen in Switzerland. Model comparison (after calibration) gave substantial agreement, the performances being marginal to acceptable for weekly-aggregated gross primary production and ecosystem respiration (R-2 similar to 0.66 – 0.91), weekly evapotranspiration (R-2 similar to 0.78 – 0.94), soil water content in the topsoil (R-2 similar to 0.1 -0.7) and soil temperature (R-2 similar to 0.88 – 0.96). The bias was limited to the range -13 to 9 g C m(-2) week(-1) for C fluxes (-11 to 8 g C m(-2) week(-1) in case of BBGC MuSo, and -13 to 9 g C m(-2) week(-1) in case of PaSim) and -4 to 6 mm week for water fluxes (with BBGC MuSo providing somewhat higher estimates than PaSim), but some higher relative root mean square errors indicate low accuracy for prediction, especially for net ecosystem exchange The sensitivity of simulated outputs to changes in atmospheric carbon dioxide concentration ([CO2]), temperature and precipitation indicate, with certain agreement between the two models, that C outcomes are dominated by [CO2] and temperature gradients, and are less due to precipitation. ET rates decrease with increasing [CO2] in PaSim (consistent with experimental knowledge), while lack of appropriate stomatal response could be a limit in BBGC MuSo responsiveness. Results of the study indicate that some of the errors might be related to the improper representation of soil water content and soil temperature. Improvement is needed in the model representations of soil processes (especially soil water balance) that strongly influence the biogeochemical cycles of managed and unmanaged grasslands. (C) 2015 Elsevier B.V. All rights reserved. |
|
| |
Address |
2016-10-31 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0167-8809 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4808 |
|
| Permanent link to this record |
