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Schauberger, B.; Rolinski, S.; Müller, C. |
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Title |
A network-based approach for semi-quantitative knowledge mining and its application to yield variability |
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Journal Article |
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Year |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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Volume |
11 |
Issue |
12 |
Pages |
123001 |
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Keywords  |
yield variability; crop models; interaction network; plant process; wheat; maize; rice; Global Food Security; Climate-Change; Crop Production; Stress Tolerance; Wheat Yields; Heat-Stress; Temperature Variability; Environmental-Factors; United-States; Elevated CO2 |
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Abstract |
Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields. |
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2017-04-07 |
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1748-9326 |
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Review |
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CropM, ft_macsur |
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MA @ admin @ |
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4942 |
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Author |
Siczek, A.; Horn, R.; Lipiec, J.; Usowicz, B.; Łukowski, M. |
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Title |
Effects of soil deformation and surface mulching on soil physical properties and soybean response related to weather conditions |
Type |
Journal Article |
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Year |
2015 |
Publication |
Soil and Tillage Research |
Abbreviated Journal |
Soil and Tillage Research |
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Volume |
153 |
Issue |
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Pages |
175-184 |
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Keywords |
straw mulch; soil temperature; soil matric potential; soil penetration resistance; soybean biomass; seed and protein yield; water productivity; bulk-density; management-practices; crop production; n-2 fixation; compaction; growth; nitrogen; yield; straw; temperature |
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Abstract |
A field experiment was conducted on Haplic Luvisol developed from loess to assess the effects of soil deformation and straw mulch on soil water status (matric potential), temperature, penetration resistance, soybean growth, seed yield and yield components including straw, protein and oil in 2006-2008. Water use efficiencies related to the amount of rainfall during the growing seasons were calculated for seeds and total above ground biomass. The soil deformation levels (main plots) comprised the following trials: non-compacted (NC, 0 tractor pass), moderately compacted (MC, 3 passes), and strongly compacted (SC, 5 passes). A uniform seedbed in all plots was prepared by harrowing before planting. The main plots included sub-plots without and with surface wheat straw mulch (0.5 kg m(-2)) and the corresponding trials were NC + M, MC + M, SC + M. The amount and distribution of rainfall during the growing season differed among the experimental years with extended drought at bloom-full seed (R2-R6) stages in 2006, good water supply in 2007, and alternative periods with relatively high and low rainfalls in 2008. The effect of soil deformation on matric potential was influenced by weather conditions, soybean growth phase, mulching and depth. The differences were greatest in 2007 and 2008 at R7-R8 growth stages. With increasing deformation level from NC to SC matric potential for 0-15 cm depth during these stages significantly decreased from -401 to -1184 kPa in 2007 and from -1154 to -1432 kPa in 2008. On mulched soil, the corresponding ranges were from -541 to -841 klpa and from -748 to -1386 kPa, respectively. In the dry summer 2006, the differences were smaller and less consistent. Irrespective of soil deformation level, mulching reduced soil temperature in most growth phases but most pronounced initially. Most yield components increased from NC to MC during the experiments which could be attributed to enhanced root water and nutrient uptake rates and decreased from MC to SC due to high soil strength that restrained root growth down to deeper depth. The yields of seeds, straw, protein and oil as well as water productivity of soybean seed and biomass were improved by mulching in 2007-2008. This improvement was more pronounced in 2007 when the mean yield of seeds, protein and oil were significantly greater by 16, 29 and 11%, respectively and was attributed to positive alterations in soil water retention. These results indicate the possibilities of improvement in soybean performance by identifying allowable amount of traffic and mulching practices at planting depending on weather fluctuations during the growing season. Since rainfall and air temperature distribution in 2007 are close to those averaged over a long period of time, the use of straw mulch may positively affect soybean performance and yields excluding anomalously dry years. The positive effect of straw mulch can be enhanced by moderate soil deformation combined with seedbed loosening before planting to avoid constraining effect of soil structure on crop establishment. (C) 2015 Elsevier B.V. All rights reserved. |
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0167-1987 |
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CropM, ft_macsur |
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MA @ admin @ |
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4732 |
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Author |
Brylińska, M.; Sobkowiak, S.; Stefańczyk, E.; Śliwka, J. |
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Title |
Potato cultivation system affects population structure of Phytophthora infestans |
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Journal Article |
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Year |
2016 |
Publication |
Fungal Ecology |
Abbreviated Journal |
Fungal Ecology |
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Volume |
20 |
Issue |
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Pages |
132-143 |
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Keywords |
SSR; Population genetic structure; Late blight; Potato; late blight resistance; mating-type; microsatellite markers; phenotypic diversity; sexual reproduction; genotypic diversity; nordic countries; severe outbreaks; sarpo mira; pathogenicity |
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Phytophthora infestans is one of the most destructive potato pathogens. Many factors influence the population structure of P. infestans, including migration, climate and type of potato cultivation. Here, we analyse 365 P. infestans isolates collected from three regions of Poland over three years. We determined mating type, mitochondrial haplotype, resistance to metalaxyl, virulence and polymorphism at 14 simple sequence repeat (SSR) loci. Analysis of SSR markers showed high genetic diversity associated with this population. Model-based structure analysis grouped 299 unique genotypes into four main clusters. The P. infestans isolates collected from the Mlochow region, which has the most intensive level of potato cultivation, formed a distinct cluster, indicating a strong effect of the cultivation system on pathogen population structure. Three clusters contained isolates with frequent presence of three alleles at one locus, which may affect their capacity for sexual reproduction and preserve groups of fit genotypes that propagate asexually. (C) 2016 Elsevier Ltd and The British Mycological Society. |
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1754-5048 |
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CropM, ft_macsur |
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MA @ admin @ |
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4720 |
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Author |
Ghaley, B.B.; Porter, J.R. |
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Title |
Ecosystem function and service quantification and valuation in a conventional winter wheat production system with the DAISY model in Denmark |
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Journal Article |
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Year |
2014 |
Publication |
Ecosystem Services |
Abbreviated Journal |
Ecosystem Services |
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Volume |
10 |
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Pages |
79-83 |
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Keywords |
soil organic matter; winter wheat production; informed decision-making; ecosystem function; ecosystem service; soil carbon sequestration; organic-matter dynamics; mitigate climate-change; calibration; validation; land |
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Abstract |
With inevitable link between ecosystem function (EF), ecosystem services (ES) and agricultural productivity, there is a need for quantification and valuation of EF and ES in agro-ecosystems. Management practices have significant effects on soil organic matter (SOM), affecting productivity, EF and ES provision. The objective was to quantify two EF: soil water storage and nitrogen mineralization and three ES: food and fodder production and carbon sequestration, in a conventional winter wheat production system at 2.6% SOM compared to 50% lower (1.3%) and 50% higher (3.9%) SOM in Denmark by DAISY model. At 2.6% SOM, the food and fodder production was 649 and 6.86 t ha(-1) year(-1) respectively whereas carbon sequestration and soil water storage was 9.73 t ha(-1) year and 684 mm ha(-1) year(-1) respectively and nitrogen mineralisation was 83.58 kg ha(-1) year(-1), AL 2.6% SOM, the two EF and three ES values were US$ 177 and US$ 2542 ha(-1) year respectively equivalent to US$ 96 and US$1370 million year(-1) respectively in Denmark. The EF and ES quantities and values were positively correlated with SOM content. Hence, the quantification and valuation of EF and ES provides an empirical tool for optimising the Er. and ES provision for agricultural productivity. (C) 2014 Elsevier B.V. All rights reserved |
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2212-0416 |
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CropM |
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MA @ admin @ |
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4625 |
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van Bussel, L.G.J.; Ewert, F.; Zhao, G.; Hoffmann, H.; Enders, A.; Wallach, D.; Asseng, S.; Baigorria, G.A.; Basso, B.; Biernath, C.; Cammarano, D.; Chryssanthacopoulos, J.; Constantin, J.; Elliott, J.; Glotter, M.; Heinlein, F.; Kersebaum, K.-C.; Klein, C.; Nendel, C.; Priesack, E.; Raynal, H.; Romero, C.C.; Rötter, R.P.; Specka, X.; Tao, F. |
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Title |
Spatial sampling of weather data for regional crop yield simulations |
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Journal Article |
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Year |
2016 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
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220 |
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101-115 |
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Keywords |
Regional crop simulations; Winter wheat; Upscaling; Stratified sampling; Yield estimates; climate-change scenarios; water availability; growth simulation; potential impact; food-production; winter-wheat; model; resolution; systems; soil |
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Field-scale crop models are increasingly applied at spatio-temporal scales that range from regions to the globe and from decades up to 100 years. Sufficiently detailed data to capture the prevailing spatio-temporal heterogeneity in weather, soil, and management conditions as needed by crop models are rarely available. Effective sampling may overcome the problem of missing data but has rarely been investigated. In this study the effect of sampling weather data has been evaluated for simulating yields of winter wheat in a region in Germany over a 30-year period (1982-2011) using 12 process-based crop models. A stratified sampling was applied to compare the effect of different sizes of spatially sampled weather data (10, 30, 50,100, 500, 1000 and full coverage of 34,078 sampling points) on simulated wheat yields. Stratified sampling was further compared with random sampling. Possible interactions between sample size and crop model were evaluated. The results showed differences in simulated yields among crop models but all models reproduced well the pattern of the stratification. Importantly, the regional mean of simulated yields based on full coverage could already be reproduced by a small sample of 10 points. This was also true for reproducing the temporal variability in simulated yields but more sampling points (about 100) were required to accurately reproduce spatial yield variability. The number of sampling points can be smaller when a stratified sampling is applied as compared to a random sampling. However, differences between crop models were observed including some interaction between the effect of sampling on simulated yields and the model used. We concluded that stratified sampling can considerably reduce the number of required simulations. But, differences between crop models must be considered as the choice for a specific model can have larger effects on simulated yields than the sampling strategy. Assessing the impact of sampling soil and crop management data for regional simulations of crop yields is still needed. |
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0168-1923 |
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CropM, ft_macsur |
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MA @ admin @ |
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4673 |
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