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Author |
Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume |
52 |
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121-135 |
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Keywords  |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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Abstract |
This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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MA @ admin @ |
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4520 |
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Author |
Mansouri, M.; Destain, M.-F. |
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Title |
Predicting biomass and grain protein content using Bayesian methods |
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Journal Article |
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Year |
2015 |
Publication |
Stochastic Environmental Research and Risk Assessment |
Abbreviated Journal |
Stoch. Environ. Res. Risk Assess. |
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29 |
Issue |
4 |
Pages |
1167-1177 |
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Keywords |
crop model; particle filter; prediction; ensemble kalman filter; parameter-estimation; particle filters; decision-support; state estimation; model; nitrogen; navigation; tracking; systems |
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Abstract |
This paper deals with the problem of predicting biomass and grain protein content using improved particle filtering (IPF) based on minimizing the Kullback-Leibler divergence. The performances of IPF are compared with those of the conventional particle filtering (PF) in two comparative studies. In the first one, we apply IPF and PF at a simple dynamic crop model with the aim to predict a single state variable, namely the winter wheat biomass, and to estimate several model parameters. In the second study, the proposed IPF and the PF are applied to a complex crop model (AZODYN) to predict a winter-wheat quality criterion, namely the grain protein content. The results of both comparative studies reveal that the IPF method provides a better estimation accuracy than the PF method. The benefit of the IPF method lies in its ability to provide accuracy related advantages over the PF method since, unlike the PF which depends on the choice of the sampling distribution used to estimate the posterior distribution, the IPF yields an optimum choice of this sampling distribution, which also utilizes the observed data. The performance of the proposed method is evaluated in terms of estimation accuracy, root mean square error, mean absolute error and execution times. |
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1436-3240 1436-3259 |
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CropM |
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MA @ admin @ |
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4664 |
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Wallach, D.; Thorburn, P.; Asseng, S.; Challinor, A.J.; Ewert, F.; Jones, J.W.; Rötter, R.; Ruane, A. |
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Title |
Estimating model prediction error: Should you treat predictions as fixed or random |
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Journal Article |
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2016 |
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Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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84 |
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529-539 |
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Keywords |
Crop model; Uncertainty; Prediction error; Parameter uncertainty; Input uncertainty; Model structure uncertainty |
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Crop models are important tools for impact assessment of climate change, as well as for exploring management options under current climate. It is essential to evaluate the uncertainty associated with predictions of these models. We compare two criteria of prediction error; MSEPfixed, which evaluates mean squared error of prediction for a model with fixed structure, parameters and inputs, and MSEPuncertain(X), which evaluates mean squared error averaged over the distributions of model structure, inputs and parameters. Comparison of model outputs with data can be used to estimate the former. The latter has a squared bias term, which can be estimated using hindcasts, and a model variance term, which can be estimated from a simulation experiment. The separate contributions to MSEPuncertain(X) can be estimated using a random effects ANOVA. It is argued that MSEPuncertain(X) is the more informative uncertainty criterion, because it is specific to each prediction situation. |
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1364-8152 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4773 |
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Author |
Murat, M.; Malinowska, I.; Hoffmann, H.; Baranowski, P. |
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Title |
Statistical modelling of agrometeorological time series by exponential smoothing |
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Journal Article |
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Year |
2016 |
Publication |
International Agrophysics |
Abbreviated Journal |
International Agrophysics |
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30 |
Issue |
1 |
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57-65 |
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Keywords |
exponential smoothing; meteorological time series; statistical forecasting; daily temperature records; weighted moving averages; climate-change; prediction; forecasts; state; weather |
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Meteorological time series are used in modelling agrophysical processes of the soil-plant-atmosphere system which determine plant growth and yield. Additionally, longterm meteorological series are used in climate change scenarios. Such studies often require forecasting or projection of meteorological variables, eg the projection of occurrence of the extreme events. The aim of the article was to determine the most suitable exponential smoothing models to generate forecast using data on air temperature, wind speed, and precipitation time series in Jokioinen (Finland), Dikopshof (Germany), Lleida (Spain), and Lublin (Poland). These series exhibit regular additive seasonality or non-seasonality without any trend, which is confirmed by their autocorrelation functions and partial autocorrelation functions. The most suitable models were indicated by the smallest mean absolute error and the smallest root mean squared error. |
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0236-8722 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4728 |
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Author |
Refsgaard, J.C.; Madsen, H.; Andréassian, V.; Arnbjerg-Nielsen, K.; Davidson, T.A.; Drews, M.; Hamilton, D.P.; Jeppesen, E.; Kjellström, E.; Olesen, J.E.; Sonnenborg, T.O.; Trolle, D.; Willems, P.; Christensen, J.H. |
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Title |
A framework for testing the ability of models to project climate change and its impacts |
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Journal Article |
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Year |
2014 |
Publication |
Climatic Change |
Abbreviated Journal |
Clim. Change |
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122 |
Issue |
1-2 |
Pages |
271-282 |
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Keywords |
simulation-models; shallow lakes; predictions; calibration; ensembles; terminology; uncertainty; temperature; adaptation; validation |
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Models used for climate change impact projections are typically not tested for simulation beyond current climate conditions. Since we have no data truly reflecting future conditions, a key challenge in this respect is to rigorously test models using proxies of future conditions. This paper presents a validation framework and guiding principles applicable across earth science disciplines for testing the capability of models to project future climate change and its impacts. Model test schemes comprising split-sample tests, differential split-sample tests and proxy site tests are discussed in relation to their application for projections by use of single models, ensemble modelling and space-time-substitution and in relation to use of different data from historical time series, paleo data and controlled experiments. We recommend that differential-split sample tests should be performed with best available proxy data in order to build further confidence in model projections. |
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0165-0009 1573-1480 |
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CropM |
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MA @ admin @ |
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4688 |
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