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Author |
Martre, P.; He, J.; Le Gouis, J.; Semenov, M.A. |
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Title |
In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management |
Type |
Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue  |
12 |
Pages |
3581-3598 |
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Keywords |
Climate; *Computer Simulation; Crops, Agricultural/*growth & development/physiology; Edible Grain/*growth & development; Models, Biological; Nitrogen/metabolism; Plant Proteins/*metabolism; Plant Transpiration; Probability; *Quantitative Trait, Heritable; Soil/chemistry; Triticum/growth & development/metabolism/*physiology; Water/chemistry; Crop growth model; genetic adaptation; grain protein concentration; grain yield; interannual variability; sensitivity analysis; wheat (Triticum aestivum L.); yield stability |
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Abstract |
Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work. |
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1460-2431 (Electronic) 0022-0957 (Linking) |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4567 |
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Author |
Heinemann, A.B.; Barrios-Perez, C.; Ramirez-Villegas, J.; Arango-Londoño, D.; Bonilla-Findji, O.; Medeiros, J.C.; Jarvis, A. |
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Title |
Variation and impact of drought-stress patterns across upland rice target population of environments in Brazil |
Type |
Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3625-3638 |
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Keywords |
Brazil; Climate; Computer Simulation; Crops, Agricultural/physiology; *Droughts; *Environment; Geography; Oryza/*physiology; Plant Transpiration; *Stress, Physiological; Water; Breeding; Oryza sativa; environment classification; modelling; water deficit. |
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Abstract |
The upland rice (UR) cropped area in Brazil has decreased in the last decade. Importantly, a portion of this decrease can be attributed to the current UR breeding programme strategy, according to which direct grain yield selection is targeted primarily to the most favourable areas. New strategies for more-efficient crop breeding under non-optimal conditions are needed for Brazil’s UR regions. Such strategies should include a classification of spatio-temporal yield variations in environmental groups, as well as a determination of prevalent drought types and their characteristics (duration, intensity, phenological timing, and physiological effects) within those environmental groups. This study used a process-based crop model to support the Brazilian UR breeding programme in their efforts to adopt a new strategy that accounts for the varying range of environments where UR is currently cultivated. Crop simulations based on a commonly grown cultivar (BRS Primavera) and statistical analyses of simulated yield suggested that the target population of environments can be divided into three groups of environments: a highly favorable environment (HFE, 19% of area), a favorable environment (FE, 44%), and least favourable environment (LFE, 37%). Stress-free conditions dominated the HFE group (69% likelihood) and reproductive stress dominated the LFE group (68% likelihood), whereas reproductive and terminal drought stress were found to be almost equally likely to occur in the FE group. For the best and worst environments, we propose specific adaptation focused on the representative stress, while for the FE, wide adaptation to drought is suggested. ‘Weighted selection’ is also a possible strategy for the FE and LFE environment groups. |
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0022-0957 1460-2431 |
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CropM |
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MA @ admin @ |
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4560 |
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Author |
Doro, L.; Jones, C.; Williams, J.R.; Norfleet, M.L.; Izaurralde, R.C.; Wang, X.; Jeong, J. |
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Title |
The Variable Saturation Hydraulic Conductivity Method for Improving Soil Water Content Simulation in EPIC and APEX Models |
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Journal Article |
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Year |
2017 |
Publication |
Vadose Zone Journal |
Abbreviated Journal |
Vadose Zone Journal |
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16 |
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13 |
Pages |
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Keywords |
Conservation Effects Assessment; Runoff Simulation; Unsaturated Soils; United-States; Porous-Media; Moisture; Flow; Productivity; Transport; Denitrification |
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Soil water percolation is a key process in the life cycle of water in fields, watersheds, and river basins. The Environmental Policy Integrated Climate (EPIC) and the Agricultural Policy/Environmental eXtender (APEX) are continuous models developed for evaluating the environmental effects of agricultural management. Traditionally, these models have simulated soil water percolation processes using a tipping-bucket approach, with the rate of flow limited by the saturated hydraulic conductivity. This simple approach often leads to inaccuracy in simulating elevated soil water conditions where soil water content (SWC) levels may remain above field capacity under prolonged wet weather periods or limited drainage. To overcome this deficiency, a new sub-model, the variable saturation hydraulic conductivity (VSHC) method, was developed for simulating soil water percolation processes using a nonlinear equation to estimate the effective hydraulic conductivity as a function of the SWC and soil properties. The VSHC method was evaluated at three sites in the United States and two sites in Europe. In addition, a numerical solution of the Richards equation was used as a benchmark for SWC comparison. Results show that the VSHC method substantially improves the accuracy of the SWC simulation in long-term simulations, particularly during wet periods. At the watershed scale, results on the Riesel Y2 watershed indicate that the VSHC method enhances model performance in the high-flow regime of channel peak flows because of the improved estimation of SWC, which implies that the improved SWC simulation at the field scale is beneficial to hydrologic modeling at the watershed scale. |
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2018-09-07 |
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1539-1663 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
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5208 |
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Author |
Cassardo, C.; Andreoli, V. |
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Title |
On the Representativeness of UTOPIA Land Surface Model for Creating a Database of Surface Layer, Vegetation and Soil Variables in Piedmont Vineyards, Italy |
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Journal Article |
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Year |
2019 |
Publication |
Applied Sciences-Basel |
Abbreviated Journal |
Applied Sciences-Basel |
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Volume |
9 |
Issue |
18 |
Pages |
3880 |
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Keywords |
land-surface; UTOPIA; NOAH; GLDAS; micrometeorology; exchanges; processes; vineyards; cabernet-sauvignon; climate-change; wine color; temperature; parameterization; simulations; circulation; balances; moisture; sunlight |
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The main aim of the paper is to show how, and how many, simulations carried out using the Land Surface Model UTOPIA (University of TOrino model of land Process Interaction with Atmosphere) are representative of the micro-meteorological conditions and exchange processes at the atmosphere/biosphere interface, with a particular focus on heat and hydrologic transfers, over an area of the Piemonte (Piedmont) region, NW Italy, which is characterized by the presence of many vineyards. Another equally important aim is to understand how much the quality of the simulation outputs was influenced by the input data, whose measurements are often unavailable for long periods over country areas at an hourly basis. Three types of forcing data were used: observations from an experimental campaign carried out during the 2008, 2009, and 2010 vegetative seasons in three vineyards, and values extracted from the freely available Global Land Data Assimilation System (GLDAS, versions 2.0 and 2.1). Since GLDAS also contains the outputs of the simulations performed using the Land Surface Model NOAH, an additional intercomparison between the two models, UTOPIA and NOAH, both driven by the same GLDAS datasets, was performed. The intercomparisons were performed on the following micro-meteorological variables: net radiation, sensible and latent turbulent heat fluxes, and temperature and humidity of soil. The results of this study indicate that the methodology of employing land surface models driven by a gridded database to evaluate variables of micro-meteorological and agronomic interest in the absence of observations is suitable and gives satisfactory results, with uncertainties comparable to measurement errors, thus, allowing us to also evaluate some time trends. The comparison between GLDAS2.0 and GLDAS2.1 indicates that the latter generally produces simulation outputs more similar to the observations than the former, using both UTOPIA and NOAH models. |
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2020-02-14 |
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CropM, ft_macsur |
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MA @ admin @ |
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5228 |
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Author |
Perego, A.; Giussani, A.; Fumagalli, M.; Sanna, M.; Chiodini, M.; Carozzi, M.; Alfieri, L.; Brenna, S.; Acutis, M. |
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Title |
Crop rotation, fertilizer types and application timing affecting nitrogen leaching in nitrate vulnerable zones in Po Valley |
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Journal Article |
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Year |
2013 |
Publication |
Italian Journal of Agrometeorology |
Abbreviated Journal |
Italian Journal of Agrometeorology |
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3 |
Issue |
2 |
Pages |
39-50 |
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Keywords |
nitrogen fertilization; crop simulation model; nitrate leaching; crop rotation; reduce ammonia losses; 4 cultivation systems; mineral nitrogen; maize; soil; slurry; simulation; model; water; groundwater |
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A critical analysis was performed to evaluate the potential risk of nitrate leaching towards groundwater in three Nitrate Vulnerable Zones (NVZs) of the Lombardia plain by applying the ARMOSA crop simulation model over a 20 years period (1988-2007). Each studied area was characterized by (i) two representative soil types, (ii) a meteorological data set, (iii) four crop rotations according to the regional land use, (iv) organic N load, calculated on the basis of livestock density. We simulated 3 scenarios defined by different fertilization time and amount of mineral and organic fertilizers. The A scenario involved no limitation in organic N application, while under the B and C scenarios the N organic amount was 170 and 250 kg N ha(-1)y(-1), respectively. The C scenario was compliant with the requirement of the 2012 Italian derogation, allowing only the use of organic manure with an efficiency greater than 65%. The model results highlighted that nitrate leaching was significantly reduced passing from the A scenario to the B and C ones (p<0.01); on average nitrogen losses decreased by up to 53% from A to B and up to 75% from A to C. |
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2038-5625 |
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CropM, ftnotmacsur |
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MA @ admin @ |
Serial |
4611 |
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