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Dumont, B., Leemans, V., Mansouri, M., Bodson, B., Destain, J. - P., & Destain, M. - F. (2014). Parameter identification of the STICS crop model, using an accelerated formal MCMC approach. Env. Model. Softw., 52, 121–135.
Abstract: This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved.
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Angulo, C., Gaiser, T., Rötter, R. P., Børgesen, C. D., Hlavinka, P., Trnka, M., et al. (2014). ‘Fingerprints’ of four crop models as affected by soil input data aggregation. European Journal of Agronomy, 61, 35–48.
Abstract: • Systematic analysis of the influence of spatial soil data resolution on simulated regional yields and total growing season evapotranspiration. • The responses of four crop models of different complexity are compared. • Differences between models are larger than the effect of the chosen spatial soil data resolution. • Low influence of soil data resolution due to: high precipitation amount, methods for calculating water retention and method of data aggregation. The spatial variability of soil properties is an important driver of yield variability at both field and regional scale. Thus, when using crop growth simulation models, the choice of spatial resolution of soil input data might be key in order to accurately reproduce observed yield variability. In this study we used four crop models (SIMPLACE<LINTUL-SLIM>, DSSAT-CSM, EPIC and DAISY) differing in the detail of modeling above-ground biomass and yield as well as of modeling soil water dynamics, water uptake and drought effects on plants to simulate winter wheat in two (agro-climatologically and geo-morphologically) contrasting regions of the federal state of North-Rhine-Westphalia (Germany) for the period from 1995 to 2008. Three spatial resolutions of soil input data were taken into consideration, corresponding to the following map scales: 1:50 000, 1:300 000 and 1:1 000 000. The four crop models were run for water-limited production conditions and model results were evaluated in the form of frequency distributions, depicted by bean-plots. In both regions, soil data aggregation had very small influence on the shape and range of frequency distributions of simulated yield and simulated total growing season evapotranspiration for all models. Further analysis revealed that the small influence of spatial resolution of soil input data might be related to: (a) the high precipitation amount in the region which partly masked differences in soil characteristics for water holding capacity, (b) the loss of variability in hydraulic soil properties due to the methods applied to calculate water retention properties of the used soil profiles, and (c) the method of soil data aggregation. No characteristic “fingerprint” between sites, years and resolutions could be found for any of the models. Our results support earlier recommendation to evaluate model results on the basis of frequency distributions since these offer quick and better insight into the distribution of simulation results as compared to summary statistics only. Finally, our results support conclusions from other studies about the usefulness of considering a multi-model approach to quantify the uncertainty in simulated yields introduced by the crop growth simulation approach when exploring the effects of scaling for regional yield impact assessments.
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De Sanctis, G., Roggero, P. P., Seddaiu, G., Orsini, R., Porter, C. H., & Jones, J. W. (2012). Long-term no tillage increased soil organic carbon content of rain-fed cereal systems in a Mediterranean area. European Journal of Agronomy, 40, 18–27.
Abstract: The differential impact on soil organic carbon (SOC) of applying no tillage (NT) compared to conventional tillage (CT, i.e. mouldboard ploughing), along with three rates of nitrogen (N) fertilizer application (0,90 and 180 kg ha(-1) y(-1)), was studied under rain-fed Mediterranean conditions in a long-term experiment based on a durum wheat-maize rotation, in which crop residues were left on the soil (NT) or incorporated (CT). Observed SOC content following 8 and 12 years of continuous treatment application was significantly higher in the top 10 cm of the soil under NT than CT, but it was similar in the 10-40 cm layer. NT grain yields for both maize and durum wheat were below those attained under CT (on average 32% and 14% lower respectively) at a given rate of N fertilizer application. Soil, climate and crop data over 5 years were used to calibrate DSSAT model in order to simulate the impact of the different management practices over a 50-year period. Good agreement was obtained between observed and simulated values for crops grain yield, above-ground biomass and observed SOC values. Results from the simulations showed that under NT the weeds growing during the intercrop fallow period made a significant contribution to the observed SOC increase. When the contribution of the weed fallow was considered, NT significantly increased SOC in the top 40 cm of the soil at an average rate of 0.43, 0.31 and 0.03 t ha(-1) per year, respectively for 180,90 and 0 kg N ha(-1) year(-1), within the simulated 50 years. Under CT, a significant SOC increase was simulated under N180 and a significant decrease when no fertilizer was supplied.
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Zhang, S., Tao, F., & Zhang, Z. (2017). Uncertainty from model structure is larger than that from model parameters in simulating rice phenology in China. Europ. J. Agron., 87, 30–39.
Abstract: Rice models have been widely used in simulating and predicting rice phenology in contrasting climate zones, however the uncertainties from model structure (different equations or models) and/or model parameters were rarely investigated. Here, five rice phenological models/modules (Le., CERES-Rice, ORYZA2000, RCM, Beta Model and SIMRIW) were applied to simulate rice phenology at 23 experimental stations from 1992 to 2009 in two major rice cultivation regions of China: the northeastern China and the southwestern China. To investigate the uncertainties from model biophysical parameters, each model was run with randomly perturbed 50 sets of parameters. The results showed that the median of ensemble simulations were better than the simulation by most models. Models couldn’t simulate well in some specific years despite of parameters optimization, suggesting model structure limit model performance in some cases. The models adopting accumulative thermal time function (e.g., CERES-Rice and ORYZA2000) had better performance in the southwestern China, in contrast, those adopting exponential function (e.g., Beta model and RCM model) had better performance in the northeastern China. In northeastern China, the contribution of model structure and model parameters to model total variance was, respectively, about 55.90% and 44.10% in simulating heading date, and about 75.43% and 24.57% in simulating maturity date. In the southwestern China, the contribution of model structure and model parameters to model total variance was, respectively, about 79.97% and 27.03% in simulating heading date, about 92.15% and 7.85% in simulating maturity date. Uncertainty from model structure was the most relevant source. The results highlight that the temperature response functions of rice development rate under extreme climate conditions should be improved based on environment-controlled experimental data.
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Webber, H., White, J. W., Kimball, B. A., Ewert, F., Asseng, S., Rezaei, E. E., et al. (2018). Physical robustness of canopy temperature models for crop heat stress simulation across environments and production conditions. Field Crops Research, 216, 75–88.
Abstract: Despite widespread application in studying climate change impacts, most crop models ignore complex interactions among air temperature, crop and soil water status, CO2 concentration and atmospheric conditions that influence crop canopy temperature. The current study extended previous studies by evaluating Tc simulations from nine crop models at six locations across environmental and production conditions. Each crop model implemented one of an empirical (EMP), an energy balance assuming neutral stability (EBN) or an energy balance correcting for atmospheric stability conditions (EBSC) approach to simulate Tc. Model performance in predicting Tc was evaluated for two experiments in continental North America with various water, nitrogen and CO2 treatments. An empirical model fit to one dataset had the best performance, followed by the EBSC models. Stability conditions explained much of the differences between modeling approaches. More accurate simulation of heat stress will likely require use of energy balance approaches that consider atmospheric stability conditions.
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