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Sharif, B.; Makowski, D.; Plauborg, F.; Olesen, J.E. |
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Title |
Comparison of regression techniques to predict response of oilseed rape yield to variation in climatic conditions in Denmark |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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82 |
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11-20 |
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Keywords |
Winter oilseed rape; Statistical models; Yield; Climate; Regression |
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Abstract |
Highlights • Regularization techniques for regression outperformed the classical regression techniques in predicting crop yields. • Different regression techniques with similar prediction accuracy showed different responses of major climatic variables to crop yield. • The regression models showed some responses of crop yield to climatic conditions that is mostly absent in process based crop models. Abstract Statistical regression models represent alternatives to process-based dynamic models for predicting the response of crop yields to variation in climatic conditions. Regression models can be used to quantify the effect of change in temperature and precipitation on yields. However, it is difficult to identify the most relevant input variables that should be included in regression models due to the high number of candidate variables and to their correlations. This paper compares several regression techniques for modeling response of winter oilseed rape yield to a high number of correlated input variables. Several statistical regression methods were fitted to a dataset including 689 observations of winter oilseed rape yield from replicated field experiments conducted in 239 sites in Denmark, covering nearly all regions of the country from 1992 to 2013. Regression methods were compared by cross-validation. The regression methods leading to the most accurate yield predictions were Lasso and Elastic Net, and the least accurate methods were ordinary least squares and stepwise regression. Partial least squares and ridge regression methods gave intermediate results. The estimated relative yield change for a +1°C temperature increase during flowering was estimated to range between 0 and +6 %, depending on choice of regression method. Precipitation was found to have an adverse effect on yield during autumn and winter. It was estimated that an increase in precipitation of +1 mm/day would result in a relative yield change ranging from 0 to −4 %. Soil type was also important for crop yields with lower yields on sandy soils compared to loamy soils. Later sowing was found to result in increased crop yield. The estimated effect of climate on yield was highly sensitive to the chosen regression method. Regression models showing similar performance led in some cases to different conclusions with respect to effect of temperature and precipitation. Hence, it is recommended to apply an ensemble of regression models, in order to account for the sensitivity of the data driven models for projecting crop yield under climate change. |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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4966 |
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Raymundo, R.; Asseng, S.; Prassad, R.; Kleinwechter, U.; Concha, J.; Condori, B.; Bowen, W.; Wolf, J.; Olesen, J.E.; Dong, Q.; Zotarelli, L.; Gastelo, M.; Alva, A.; Travasso, M.; Quiroz, R.; Arora, V.; Graham, W.; Porter, C. |
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Performance of the SUBSTOR-potato model across contrasting growing conditions |
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Journal Article |
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Year |
2017 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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202 |
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57-76 |
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0378-4290 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4967 |
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Hlavinka, P.; Olesen, J.E.; Kersebaum, K.-C.; Trnka, M.; Pohankova, E.; Stella, T.; Ferrise, R.; Moriondo, M.; Hoogenbom, G.; Shelia, V.; Nendel, C.; Wimmerová, M.; Topaj, A.; Medvedev, S.; Ventrella, D.; Ruiz-Ramos, M.; Rodríguez Sánchez, A.; Takáč, J.; Patil, R.H.; Öztürk, I.; Hoffmann, M.; Gobin, A.; Rötter, R.P. |
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Modelling long term effects of cropping and managements systems on soil organic matter, C/N dynamics and crop growth |
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2017 |
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FACCE MACSUR Reports |
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10 |
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C1.3-D |
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While simulation of cropping systems over a few years might reflect well the short term effects of management and cultivation, long term effects on soil properties and their consequences for crop growth and matter fluxes are not captured. Especially the effect on soil carbon sequestration/depletion is addressed by this task. Simulations of an ensemble of crop models are performed as transient runs over a period of 120 year using observed weather from three stations in Czech Republic (1961-2010) and transient long time climate change scenarios (2011-2080) from five GCM of the CMIP5 ensemble to assess the effect of different cropping and management systems on carbon sequestration, matter fluxes and crop production in an integrative way. Two cropping systems are regarded comprising two times winter wheat, silage maize, spring barley and oilseed rape. Crop rotations differ regarding their organic input from crop residues, nitrogen fertilization and implementation of catch crops. Models are applied for two soil types with different water holding capacity. Cultivation and nutrient management is adapted using management rules related to weather and soil conditions. Data of phenology and crop yield from the region of the regarded crops were provided to calibrate the models for crops of the rotations. Twelve models were calibrated in this first step. For the transient long term runs results of four models were submitted so far. Outputs are crop yields, nitrogen uptake, soil water and mineral nitrogen contents, as well as water and nitrogen fluxes to the atmosphere and groundwater. Changes in the carbon stocks and the consequences for nitrogen mineralisation, N fertilization and emissions also considered. |
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XC |
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MA @ admin @ |
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4976 |
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Montesino-San Martin, M.; Wallach, D.; Olesen, J.E.; Porter, J.R. |
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Quantifying data requirements in crop models; applying the learning curve approach to winter wheat phenology models |
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CropM |
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MA @ admin @ |
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5023 |
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Wang, E.; Martre, P.; Zhao, Z.; Ewert, F.; Maiorano, A.; Rötter, R.P.; Kimball, B.A.; Ottman, M.J.; Wall, G.W.; White, J.W.; Reynolds, M.P.; Alderman, P.D.; Aggarwal, P.K.; Anothai, J.; Basso, B.; Biernath, C.; Cammarano, D.; Challinor, A.J.; De Sanctis, G.; Doltra, J.; Fereres, E.; Garcia-Vila, M.; Gayler, S.; Hoogenboom, G.; Hunt, L.A.; Izaurralde, R.C.; Jabloun, M.; Jones, C.D.; Kersebaum, K.C.; Koehler, A.-K.; Liu, L.; Müller, C.; Naresh Kumar, S.; Nendel, C.; O’Leary, G.; Olesen, J.E.; Palosuo, T.; Priesack, E.; Eyshi Rezaei, E.; Ripoche, D.; Ruane, A.C.; Semenov, M.A.; Shcherbak, I.; Stöckle, C.; Stratonovitch, P.; Streck, T.; Supit, I.; Tao, F.; Thorburn, P.; Waha, K.; Wallach, D.; Wang, Z.; Wolf, J.; Zhu, Y.; Asseng, S. |
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The uncertainty of crop yield projections is reduced by improved temperature response functions |
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Journal Article |
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2017 |
Publication |
Nature Plants |
Abbreviated Journal |
Nature Plants |
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3 |
Issue |
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17102 |
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Increasing the accuracy of crop productivity estimates is a key element in planning adaptation strategies to ensure global food security under climate change. Process-based crop models are effective means to project climate impact on crop yield, but have large uncertainty in yield simulations. Here, we show that variations in the mathematical functions currently used to simulate temperature responses of physiological processes in 29 wheat models account for >50% of uncertainty in simulated grain yields for mean growing season temperatures from 14 °C to 33 °C. We derived a set of new temperature response functions that when substituted in four wheat models reduced the error in grain yield simulations across seven global sites with different temperature regimes by 19% to 50% (42% average). We anticipate the improved temperature responses to be a key step to improve modelling of crops under rising temperature and climate change, leading to higher skill of crop yield projections. Erratum: doi: 10.1038/nplants.2017.125 |
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2017-08-28 |
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CropM, ft_macsur |
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MA @ admin @ |
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5173 |
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