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Porter, J. R., & Christensen, S. (2013). Deconstructing crop processes and models via identities. Plant Cell and Environment, 36(11), 1919–1925.
Abstract: This paper is part review and part opinion piece; it has three parts of increasing novelty and speculation in approach. The first presents an overview of how some of the major crop simulation models approach the issue of simulating the responses of crops to changing climatic and weather variables, mainly atmospheric CO2 concentration and increased and/or varying temperatures. It illustrates an important principle in models of a single cause having alternative effects and vice versa. The second part suggests some features, mostly missing in current crop models, that need to be included in the future, focussing on extreme events such as high temperature or extreme drought. The final opinion part is speculative but novel. It describes an approach to deconstruct resource use efficiencies into their constituent identities or elements based on the Kaya-Porter identity, each of which can be examined for responses to climate and climatic change. We give no promise that the final part is correct’, but we hope it can be a stimulation to thought, hypothesis and experiment, and perhaps a new modelling approach.
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Comadira, G., Rasool, B., Karpinska, B., Morris, J., Verrall, S. R., Hedley, P. E., et al. (2015). Nitrogen deficiency in barley (Hordeum vulgare) seedlings induces molecular and metabolic adjustments that trigger aphid resistance. J. Experim. Bot., 66(12), 3639–3655.
Abstract: Agricultural nitrous oxide (N2O) pollution resulting from the use of synthetic fertilizers represents a significant contribution to anthropogenic greenhouse gas emissions, providing a rationale for reduced use of nitrogen (N) fertilizers. Nitrogen limitation results in extensive systems rebalancing that remodels metabolism and defence processes. To analyse the regulation underpinning these responses, barley (Horedeum vulgare) seedlings were grown for 7 d under N-deficient conditions until net photosynthesis was 50% lower than in N-replete controls. Although shoot growth was decreased there was no evidence for the induction of oxidative stress despite lower total concentrations of N-containing antioxidants. Nitrogen-deficient barley leaves were rich in amino acids, sugars and tricarboxylic acid cycle intermediates. In contrast to N-replete leaves one-day-old nymphs of the green peach aphid (Myzus persicae) failed to reach adulthood when transferred to N-deficient barley leaves. Transcripts encoding cell, sugar and nutrient signalling, protein degradation and secondary metabolism were over-represented in N-deficient leaves while those associated with hormone metabolism were similar under both nutrient regimes with the exception of mRNAs encoding proteins involved in auxin metabolism and responses. Significant similarities were observed between the N-limited barley leaf transcriptome and that of aphid-infested Arabidopsis leaves. These findings not only highlight significant similarities between biotic and abiotic stress signalling cascades but also identify potential targets for increasing aphid resistance with implications for the development of sustainable agriculture.
Keywords: Animals; Aphids/drug effects/*physiology; Biomass; Carbon/pharmacology; Chlorophyll/metabolism; Cluster Analysis; *Disease Resistance/drug effects; Gases/metabolism; Gene Expression Regulation, Plant/drug effects; Hordeum/drug effects/genetics/*parasitology; Nitrogen/*deficiency/metabolism/pharmacology; Oxidation-Reduction/drug effects; Photosynthesis/drug effects; Plant Diseases/genetics/*parasitology; Plant Leaves/drug effects/genetics/metabolism; Plant Proteins/genetics/metabolism; Plant Shoots/drug effects/metabolism; RNA, Messenger/genetics/metabolism; Secondary Metabolism/drug effects; Seedlings/drug effects/*metabolism/*parasitology; Signal Transduction/drug effects; Thylakoids/drug effects/metabolism/parasitology; Transcription Factors/metabolism; Transcriptome/genetics; Cross-tolerance; Myzus persicae; kinase cascades; metabolite profiles; nitrogen limitation; oxidative stress; sugar signalling
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Popp, A., Humpenöder, F., Weindl, I., Bodirsky, B. L., Bonsch, M., Lotze-Campen, H., et al. (2014). Land-use protection for climate change mitigation. Nat. Clim. Change, 4(12), 1095–1098.
Abstract: Land-use change, mainly the conversion of tropical forests to agricultural land, is a massive source of carbon emissions and contributes substantially to global warming(1-3). Therefore, mechanisms that aim to reduce carbon emissions from deforestation are widely discussed, A central challenge is the avoidance of international carbon leakage if forest conservation is not implemented globally’’, Here, We show that forest conservation schemes, even if implemented globally, could lead to another type of carbon leakage by driving cropland expansion in non-forested areas that are not subject to forest conservation schemes (non-forest leakage). These areas have a smaller. but still considerable potential to store carbon(5,6). We show that a global forest policy could reduce carbon emissions by 77 Gt CO2, but would still allow for decreases in carbon stocks of non-forest land by 96 Gt CO2, until 2100 due to non-forest leakage effects. Furthermore; abandonment of agricultural hand and associated carbon uptake through vegetation regrowth is hampered. Effective mitigation measures thus require financing structures and conservation investments that cover the full range of carbon-rich ecosystems. However, our analysis indicates that greater agricultural productivity increases would be needed to compensate for such restrictions on agricultural expansion.
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Kim, D. - G., Thomas, A. D., Pelster, D., Rosenstock, T. S., & Sanz-Cobena, A. (2016). Greenhouse gas emissions from natural ecosystems and agricultural lands in sub-Saharan Africa: synthesis of available data and suggestions for further research. Biogeosciences, 13(16), 4789–4809.
Abstract: This paper summarizes currently available data on greenhouse gas (GHG) emissions from African natural ecosystems and agricultural lands. The available data are used to synthesize current understanding of the drivers of change in GHG emissions, outline the knowledge gaps, and suggest future directions and strategies for GHG emission research. GHG emission data were collected from 75 studies conducted in 22 countries (n = 244) in sub-Saharan Africa (SSA). Carbon dioxide (CO2) emissions were by far the largest contributor to GHG emissions and global warming potential (GWP) in SSA natural terrestrial systems. CO2 emissions ranged from 3.3 to 57.0 Mg CO2 ha(-1) yr(-1), methane (CH4) emissions ranged from -4.8 to 3.5 kg ha(-1) yr(-1) (-0.16 to 0.12 Mg CO2 equivalent (eq.) ha(-1) yr(-1)), and nitrous oxide (N2O) emissions ranged from -0.1 to 13.7 kg ha(-1) yr(-1) (-0.03 to 4.1 Mg CO2 eq. ha(-1) yr(-1)). Soil physical and chemical properties, rewetting, vegetation type, forest management, and land-use changes were all found to be important factors affecting soil GHG emissions from natural terrestrial systems. In aquatic systems, CO2 was the largest contributor to total GHG emissions, ranging from 5.7 to 232.0 Mg CO2 ha(-1) yr(-1), followed by -26.3 to 2741.9 kgCH(4) ha(-1) yr(-1) (-0.89 to 93.2 Mg CO2 eq. ha(-1) yr(-1)) and 0.2 to 3.5 kg N2O ha(-1) yr(-1) (0.06 to 1.0 Mg CO2 eq. ha(-1) yr(-1)). Rates of all GHG emissions from aquatic systems were affected by type, location, hydrological characteristics, and water quality. In croplands, soil GHG emissions were also dominated by CO2, ranging from 1.7 to 141.2 Mg CO2 ha(-1) yr(-1), with -1.3 to 66.7 kgCH(4) ha(-1) yr(-1) (-0.04 to 2.3 Mg CO2 eq. ha(-1) yr(-1)) and 0.05 to 112.0 kg N2O ha(-1) yr(-1) (0.015 to 33.4 Mg CO2 eq. ha(-1) yr(-1)). N2O emission factors (EFs) ranged from 0.01 to 4.1 %. Incorporation of crop residues or manure with inorganic fertilizers invariably resulted in significant changes in GHG emissions, but results were inconsistent as the magnitude and direction of changes were differed by gas. Soil GHG emissions from vegetable gardens ranged from 73.3 to 132.0 Mg CO2 ha(-1) yr(-1) and 53.4 to 177.6 kg N2O ha(-1) yr(-1) (15.9 to 52.9 Mg CO2 eq. ha(-1) yr(-1)) and N2O EFs ranged from 3 to 4 %. Soil CO2 and N2O emissions from agroforestry were 38.6 Mg CO2 ha(-1) yr(-1) and 0.2 to 26.7 kg N2O ha(-1) yr(-1) (0.06 to 8.0 Mg CO2 eq. ha(-1) yr(-1)), respectively. Improving fallow with nitrogen (N)-fixing trees led to increased CO2 and N2O emissions compared to conventional croplands. The type and quality of plant residue in the fallow is an important control on how CO2 and N2O emissions are affected. Throughout agricultural lands, N2O emissions slowly increased with N inputs below 150 kg N ha(-1) yr(-1) and increased exponentially with N application rates up to 300 kg N ha(-1) yr(-1). The lowest yield-scaled N2O emissions were reported with N application rates ranging between 100 and 150 kg N ha(-1). Overall, total CO2 eq. emissions from SSA natural ecosystems and agricultural lands were 56.9 +/- 12.7 x 10(9) Mg CO2 eq. yr(-1) with natural ecosystems and agricultural lands contributing 76.3 and 23.7 %, respectively. Additional GHG emission measurements are urgently required to reduce uncertainty on annual GHG emissions from the different land uses and identify major control factors and mitigation options for low-emission development. A common strategy for addressing this data gap may include identifying priorities for data acquisition, utilizing appropriate technologies, and involving international networks and collaboration.
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Elliott, J., Müller, C., Deryng, D., Chryssanthacopoulos, J., Boote, K. J., Büchner, M., et al. (2015). The Global Gridded Crop Model Intercomparison: data and modeling protocols for Phase 1 (v1.0). Geosci. Model Dev., 8(2), 261–277.
Abstract: We present protocols and input data for Phase 1 of the Global Gridded Crop Model Intercomparison, a project of the Agricultural Model Intercomparison and Improvement Project (AgMIP). The project includes global simulations of yields, phenologies, and many land-surface fluxes using 12-15 modeling groups for many crops, climate forcing data sets, and scenarios over the historical period from 1948 to 2012. The primary outcomes of the project include (1) a detailed comparison of the major differences and similarities among global models commonly used for large-scale climate impact assessment, (2) an evaluation of model and ensemble hindcasting skill, (3) quantification of key uncertainties from climate input data, model choice, and other sources, and (4) a multi-model analysis of the agricultural impacts of large-scale climate extremes from the historical record.
Keywords: land-surface model; climate-change; systems simulation; high-resolution; water; carbon; yield; agriculture; patterns; growth
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